Resource

Id Histone_ChIP-seq/ENCSR130IMVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR130IMV [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR130IMV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000192/
  • biosample_summary: Homo sapiens smooth muscle cell originated from H9
  • date_created: 2016-04-11T19:04:23.359663+00:00
  • date_released: 2016-04-27
  • doi: 10.17989/ENCSR130IMV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR130IMV float

Histone_ChIP-seq_ENCSR130IMV
Histone_ChIP-seq ENCSR130IMV [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR130IMV [1.17, 7.38]
n
87,005,659
mean
3.33
sd
0.761

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 870056592.70% 106994
chr1 8192680 3.29% 9910
chr1_KI270713v1_random 1158 2.84% 2
chr2 7410511 3.06% 9035
chr3 6143725 3.10% 7491
chr4 4578183 2.41% 5639
chr5 5503115 3.03% 6737
chr6 5522077 3.23% 6684
chr7 4311534 2.71% 5287
chr8 4038270 2.78% 5062
chr9 3898476 2.82% 4746
chr10 4327687 3.23% 5414
chr11 4848065 3.59% 5859
chr12 4490075 3.37% 5459
chr13 2508045 2.19% 3106
chr14 3178880 2.97% 3727
chr15 3036287 2.98% 3586
chr16 2367709 2.62% 3104
chr17 3397545 4.08% 4190
chr18 2354607 2.93% 2797
chr19 1500433 2.56% 2152
chr20 2005273 3.11% 2525
chr21 881114 1.89% 1121
chr22 1325271 2.61% 1689
chrUn_GL000195v1 2639 1.44% 2
chrUn_KI270467v1 1181 30.13% 2
chrX 1181119 0.76% 1668
3340 contigs with no values (186076939 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 106994 185 12479 813.18 655
global segment-length histogram

Files

Filename Size md5
ENCFF464CMD.bed.gz 2.36 MB 74a44c08c79ebcf5a57d2703d5baf85e
ENCFF464CMD.tabix.bed.gz 1.1 MB a9cdc3288cc639356287f308482874ce
ENCFF464CMD.tabix.bed.gz.tbi 380.81 KB e4a919171ab28859c91f3681012cde8b
genomic_resource.yaml 1.98 KB a2628547d79546fbeda815cd70711490
statistics/