| Id: | Histone_ChIP-seq/ENCSR128SVE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR128SVE [biosamplesummary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN281PVN|/analyses/ENCAN281PVN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF497RWO|/files/ENCFF497RWO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF497RWO|/files/ENCFF497RWO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.58. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR128SVE | float |
Histone_ChIP-seq_ENCSR128SVE |
Histone_ChIP-seq ENCSR128SVE [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
|
 |
[1.72, 70.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF401CRB.bed.gz | 1.23 MB | cec5b74bb94f2dc2841cb30b7533595d |
| ENCFF401CRB.bed.gz.dvc | 101.0 B | 0175c151e7641c1fec7624ea18538f12 |
| ENCFF401CRB.tabix.bed.gz | 558.77 KB | 70b371802ba41be1baf68c4667e8cb25 |
| ENCFF401CRB.tabix.bed.gz.dvc | 106.0 B | 3c8e1904710206eb77b5340f6c37af44 |
| ENCFF401CRB.tabix.bed.gz.tbi | 251.85 KB | 3b195db650eb5a38bea3e8e733fa65d7 |
| ENCFF401CRB.tabix.bed.gz.tbi.dvc | 110.0 B | 261ae29eb62caebb87d5cec8fd226487 |
| genomic_resource.yaml | 3.01 KB | 7515723f1f17c31801b4ecc8a991e65e |
| genomic_resource_original.yaml | 2.82 KB | bfcf8bafdc9535a7b2e9c08e544eb319 |
| statistics/ |