Resource

Id Histone_ChIP-seq/ENCSR126BGUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR126BGU [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR126BGU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_NTR_0000856/
  • biosample_summary: Homo sapiens mesendoderm originated from H1
  • date_created: 2015-09-16T19:16:55.576453+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR126BGU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR126BGU float

Histone_ChIP-seq_ENCSR126BGU
Histone_ChIP-seq ENCSR126BGU [biosample_summary="Homo sapiens mesendoderm originated from H1" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR126BGU [1.82, 18]
n
26,137,388
mean
6.77
sd
2.29

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 261373880.81% 47408
chr1 2623656 1.05% 4756
chr2 1783326 0.74% 3205
chr3 1464927 0.74% 2551
chr4 1060378 0.56% 1779
chr5 1298486 0.72% 2324
chr6 1605374 0.94% 2810
chr7 1208472 0.76% 2195
chr8 1027100 0.71% 1775
chr9 1072349 0.77% 1914
chr10 1119783 0.84% 2010
chr11 1458584 1.08% 2600
chr12 1369273 1.03% 2463
chr13 522638 0.46% 929
chr14 900738 0.84% 1576
chr15 852488 0.84% 1515
chr16 1019920 1.13% 1897
chr17 1558443 1.87% 2848
chr18 472927 0.59% 848
chr19 1621580 2.77% 3182
chr20 723773 1.12% 1319
chr21 239634 0.51% 430
chr22 542637 1.07% 1040
chrX 573245 0.37% 1396
chrY 17657 0.03% 46
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 47408 125 6310 551.33 431
global segment-length histogram

Files

Filename Size md5
ENCFF686UZU.bed.gz 1002.58 KB 8c009a23ae27a964370b599994a0c8c0
ENCFF686UZU.tabix.bed.gz 492.93 KB 76693b10d51d92a6dcf0330f3a14278f
ENCFF686UZU.tabix.bed.gz.tbi 166.46 KB a3c8e857c86f016cc7b6abaedcf05f3f
genomic_resource.yaml 1.68 KB a7839273d9beb90cdce12222b269ad0e
statistics/