Resource

Id Histone_ChIP-seq/ENCSR125KVGcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR125KVG [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR125KVG
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2022-05-11T01:54:38.140237+00:00
  • date_released: 2022-06-09
  • doi: 10.17989/ENCSR125KVG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR125KVG float

Histone_ChIP-seq_ENCSR125KVG
Histone_ChIP-seq ENCSR125KVG [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR125KVG [1.83, 55.7]
n
126,946,125
mean
10
sd
6.95

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1269461253.95% 88537
chr1 12938178 5.20% 8596
chr2 9168240 3.79% 6627
chr3 7549131 3.81% 5405
chr4 4800044 2.52% 3567
chr5 6432237 3.54% 4660
chr6 6412890 3.75% 4550
chr7 5737626 3.60% 4352
chr8 4949895 3.41% 3593
chr9 6244716 4.51% 4174
chr10 6457864 4.83% 4418
chr11 8025905 5.94% 5256
chr12 6350924 4.77% 4562
chr13 2791229 2.44% 2106
chr14 4344998 4.06% 2968
chr15 4394726 4.31% 3069
chr16 4827697 5.34% 3307
chr17 7296205 8.76% 4680
chr18 2350775 2.92% 1794
chr19 5747750 9.81% 3740
chr20 3709305 5.76% 2564
chr21 1368010 2.93% 978
chr22 3288521 6.47% 2181
chrX 1759259 1.13% 1390
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 88537 195 81779 1433.82 929
global segment-length histogram

Files

Filename Size md5
ENCFF509IXE.bed.gz 1.86 MB 58dc4827b176da2c73437d30864a1017
ENCFF509IXE.tabix.bed.gz 909.2 KB 190de427c39743ec3be24c27805d7e6a
ENCFF509IXE.tabix.bed.gz.tbi 251.7 KB 9b7bc2731c3e6ea4429002b9e4d604f9
genomic_resource.yaml 1.75 KB fd683fb3acaf2d92a57e80a48b51c51b
statistics/