Histone_ChIP-seq_ENCSR125IJY
Histone_ChIP-seq ENCSR125IJY [biosample_summary="Homo sapiens SK-N-SH" and target="H3F3A"]
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| Id: | Histone_ChIP-seq/ENCSR125IJY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR125IJY [biosamplesummary="Homo sapiens SK-N-SH" and target="H3F3A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN291VUG|/analyses/ENCAN291VUG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF754AJD|/files/ENCFF754AJD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 22897336 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3F3A-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF671ZSB|/files/ENCFF671ZSB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 22504933 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3F3A-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF671ZSB|/files/ENCFF671ZSB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.93. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR125IJY | float |
Histone_ChIP-seq_ENCSR125IJY |
Histone_ChIP-seq ENCSR125IJY [biosample_summary="Homo sapiens SK-N-SH" and target="H3F3A"]
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[1.13, 9.36] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF202WFY.bed.gz | 2.55 MB | a79237e07bfe6eea7b0f0d9c2d0dc9b8 |
| ENCFF202WFY.bed.gz.dvc | 101.0 B | fedc241620c161834cc30ef1127cc76e |
| ENCFF202WFY.tabix.bed.gz | 1.14 MB | c6e776f1eaac6d39b2c1b0f81884ef0f |
| ENCFF202WFY.tabix.bed.gz.dvc | 107.0 B | db12a8df5180607313ee64fb561d8750 |
| ENCFF202WFY.tabix.bed.gz.tbi | 312.58 KB | 17a24eb61ebaf973a10e4df47c8337c7 |
| ENCFF202WFY.tabix.bed.gz.tbi.dvc | 110.0 B | 295bccd045a522d0d3a5453fcdfd6f5a |
| genomic_resource.yaml | 3.0 KB | 410cb7e4cf25d00ca612e2f752e024dc |
| genomic_resource_original.yaml | 2.89 KB | bd6fd5662a2f829e5e3ca4c20d2b04c8 |
| statistics/ |