Histone_ChIP-seq_ENCSR124MTJ
Histone_ChIP-seq ENCSR124MTJ [biosample_summary="Homo sapiens GM23248" and target="H3K4me2"]
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| Id: | Histone_ChIP-seq/ENCSR124MTJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR124MTJ [biosamplesummary="Homo sapiens GM23248" and target="H3K4me2"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN035CRS|/analyses/ENCAN035CRS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF507DHX|/files/ENCFF507DHX/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF507DHX|/files/ENCFF507DHX/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.60. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR124MTJ | float |
Histone_ChIP-seq_ENCSR124MTJ |
Histone_ChIP-seq ENCSR124MTJ [biosample_summary="Homo sapiens GM23248" and target="H3K4me2"]
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[1.65, 22.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF408FUU.bed.gz | 2.35 MB | 9e452c7ef249618a9dedd588ec3b1fa6 |
| ENCFF408FUU.bed.gz.dvc | 101.0 B | 5d4721f34a586f22b8e640819692fc0b |
| ENCFF408FUU.tabix.bed.gz | 1.03 MB | 85b471f6d998767a4c78caf0615bcabb |
| ENCFF408FUU.tabix.bed.gz.dvc | 107.0 B | d0e0daeac443e09a6507b6c619f3038d |
| ENCFF408FUU.tabix.bed.gz.tbi | 340.0 KB | 47c0b95c0087ab8f36e9a7ce7a4d4ba4 |
| ENCFF408FUU.tabix.bed.gz.tbi.dvc | 110.0 B | c1e5a57e643a38c9bd19fb80cd93bb6b |
| genomic_resource.yaml | 2.73 KB | bc5e6dd591bf07bc0e78aa6171117162 |
| genomic_resource_original.yaml | 2.62 KB | b8100f9f09c4600fe138d4feaa269b8f |
| statistics/ |