Histone_ChIP-seq_ENCSR123OMJ
Histone_ChIP-seq ENCSR123OMJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (66 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR123OMJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR123OMJ [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (66 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (66 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN107ZNJ|/analyses/ENCAN107ZNJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF598EXA|/files/ENCFF598EXA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF598EXA|/files/ENCFF598EXA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR123OMJ | float |
Histone_ChIP-seq_ENCSR123OMJ |
Histone_ChIP-seq ENCSR123OMJ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (66 years)" and target="H3K4me3"]
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[2.05, 89.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF796YQI.bed.gz | 757.03 KB | 14678c03fc2c3c1e408849340ee022b5 |
| ENCFF796YQI.bed.gz.dvc | 100.0 B | 3af26dd457d6c5c0a4c931193d68a284 |
| ENCFF796YQI.tabix.bed.gz | 328.71 KB | 344ea748ca568a22296b2ecc93bb7bb0 |
| ENCFF796YQI.tabix.bed.gz.dvc | 106.0 B | 449a64958a862769866610d3cf7df812 |
| ENCFF796YQI.tabix.bed.gz.tbi | 176.95 KB | fa8018004ddbb7a6cc8b8ddd18efc543 |
| ENCFF796YQI.tabix.bed.gz.tbi.dvc | 110.0 B | 3715038105a4564728c007070482689c |
| genomic_resource.yaml | 2.79 KB | c6a9573d2fe1e7bba482d29f7f3a4552 |
| genomic_resource_original.yaml | 2.65 KB | 8ecdc653dc73148417b5827eb10b3956 |
| statistics/ |