Histone_ChIP-seq_ENCSR123JZO
Histone_ChIP-seq ENCSR123JZO [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H2BK15ac"]
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| Id: | Histone_ChIP-seq/ENCSR123JZO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR123JZO [biosamplesummary="Homo sapiens neuronal stem cell originated from H1" and target="H2BK15ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN852LHX|/analyses/ENCAN852LHX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN852LHX|/analyses/ENCAN852LHX/} has in progress subobject document {6fd5104d-3b48-4b2c-b254-9d8e66826b73|/documents/6fd5104d-3b48-4b2c-b254-9d8e66826b73/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF359QSN|/files/ENCFF359QSN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF359QSN|/files/ENCFF359QSN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.34. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR123JZO | float |
Histone_ChIP-seq_ENCSR123JZO |
Histone_ChIP-seq ENCSR123JZO [biosample_summary="Homo sapiens neuronal stem cell originated from H1" and target="H2BK15ac"]
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[1.6, 9.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF704UWK.bed.gz | 1.26 MB | c952993e88e121cd42e524aa57ccbca0 |
| ENCFF704UWK.bed.gz.dvc | 101.0 B | 73273365e5983be54b2091dacf7ff17e |
| ENCFF704UWK.tabix.bed.gz | 637.8 KB | 73472e0eab28f0420f40fedb81845c4b |
| ENCFF704UWK.tabix.bed.gz.dvc | 106.0 B | bf93c491656c73312b9eb26617215293 |
| ENCFF704UWK.tabix.bed.gz.tbi | 206.19 KB | 5a1750979cded2615c08796a5e79bf17 |
| ENCFF704UWK.tabix.bed.gz.tbi.dvc | 110.0 B | d2f3acc13939cb58a6d475ea70a491b2 |
| genomic_resource.yaml | 2.97 KB | 9fcbbf44ad34d0346f3c8003133087c9 |
| genomic_resource_original.yaml | 2.84 KB | 72b9ae39869ab61ff238419a583bcee0 |
| statistics/ |