Histone_ChIP-seq_ENCSR123HEE
Histone_ChIP-seq ENCSR123HEE [biosample_summary="Homo sapiens layer of hippocampus tissue female adult (75 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR123HEE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR123HEE [biosamplesummary="Homo sapiens layer of hippocampus tissue female adult (75 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN817LLY|/analyses/ENCAN817LLY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF021NCO|/files/ENCFF021NCO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12478262 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF021NCO|/files/ENCFF021NCO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.97. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR123HEE | float |
Histone_ChIP-seq_ENCSR123HEE |
Histone_ChIP-seq ENCSR123HEE [biosample_summary="Homo sapiens layer of hippocampus tissue female adult (75 years)" and target="H3K27ac"]
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[1.6, 106] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF850FJG.bed.gz | 1.51 MB | ed21c360cde8f5ec955f5a554417a9bc |
| ENCFF850FJG.bed.gz.dvc | 101.0 B | 936383f6f8b0e686c47e1ffd98ec3dc0 |
| ENCFF850FJG.tabix.bed.gz | 732.66 KB | f27c260c2013683c73b2c0e4e8f5ea05 |
| ENCFF850FJG.tabix.bed.gz.dvc | 106.0 B | 6a5fd5f5d7c679293b2daf3661ec56b9 |
| ENCFF850FJG.tabix.bed.gz.tbi | 222.0 KB | 92f22ebda5183d0951114e7084bd12eb |
| ENCFF850FJG.tabix.bed.gz.tbi.dvc | 110.0 B | d3be6842be25dd0f7c359883916737c4 |
| genomic_resource.yaml | 2.64 KB | a4c89fe89f0bfc4c25c9fb2bb364ee62 |
| genomic_resource_original.yaml | 2.49 KB | e667aa6e2450421922e2c5955262fb50 |
| statistics/ |