Resource

Id Histone_ChIP-seq/ENCSR122MPCcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR122MPC [biosample_summary="Homo sapiens spleen tissue female adult (59 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR122MPC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002106/
  • biosample_summary: Homo sapiens spleen tissue female adult (59 years)
  • date_created: 2020-05-01T03:04:23.002397+00:00
  • date_released: 2020-09-10
  • doi: 10.17989/ENCSR122MPC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (59 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR122MPC float

Histone_ChIP-seq_ENCSR122MPC
Histone_ChIP-seq ENCSR122MPC [biosample_summary="Homo sapiens spleen tissue female adult (59 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR122MPC [1.69, 22.9]
n
25,395,252
mean
9.17
sd
3.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 253952520.79% 20711
chr1 2540510 1.02% 2099
chr2 1742188 0.72% 1360
chr3 1445772 0.73% 1110
chr4 1007066 0.53% 757
chr5 1217026 0.67% 925
chr6 1529844 0.90% 1174
chr7 1226465 0.77% 1033
chr8 917491 0.63% 728
chr9 1031425 0.75% 872
chr10 1080200 0.81% 845
chr11 1416418 1.05% 1123
chr12 1339344 1.00% 1042
chr13 518331 0.45% 402
chr14 852493 0.80% 690
chr15 823554 0.81% 678
chr16 990131 1.10% 830
chr17 1521894 1.83% 1253
chr18 405925 0.51% 339
chr19 1668376 2.85% 1512
chr20 634344 0.98% 528
chr21 244392 0.52% 215
chr22 563238 1.11% 498
chrX 678825 0.44% 698
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20711 225 8553 1226.17 1083
global segment-length histogram

Files

Filename Size md5
ENCFF636LHJ.bed.gz 495.86 KB 247b8e9780f9e4416dcdc07c3c09a3ce
ENCFF636LHJ.tabix.bed.gz 230.68 KB 3eaece38d92ab47e071fbaf965a6f6db
ENCFF636LHJ.tabix.bed.gz.tbi 130.68 KB ab53444e9f97cee22e74de537d8a0a91
genomic_resource.yaml 1.71 KB 266aec0973265eb00ef5714150395a4e
statistics/