Resource

Id Histone_ChIP-seq/ENCSR122IJJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR122IJJ [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR122IJJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001608/
  • biosample_summary: Homo sapiens foreskin fibroblast male newborn
  • date_created: 2015-09-15T20:26:42.553959+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR122IJJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR122IJJ float

Histone_ChIP-seq_ENCSR122IJJ
Histone_ChIP-seq ENCSR122IJJ [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR122IJJ [1.86, 128]
n
48,402,198
mean
37.8
sd
24.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 484021981.50% 33753
chr1 4749541 1.91% 3267
chr1_KI270712v1_random 932 0.53% 1
chr1_KI270713v1_random 240 0.59% 1
chr1_KI270714v1_random 460 1.10% 1
chr2 3271041 1.35% 2288
chr3 2693146 1.36% 1746
chr4 1867112 0.98% 1257
chr5 2274065 1.25% 1509
chr6 2888747 1.69% 1935
chr7 2354424 1.48% 1688
chr8 1781254 1.23% 1267
chr9 1977959 1.43% 1447
chr10 2004606 1.50% 1400
chr11 2677155 1.98% 1788
chr12 2721897 2.04% 1779
chr13 984040 0.86% 698
chr14 1497626 1.40% 1010
chr15 1552060 1.52% 1089
chr16 2016518 2.23% 1524
chr17 2930835 3.52% 2121
chr17_GL000205v2_random 2156 1.16% 2
chr18 795709 0.99% 612
chr19 3291960 5.62% 2404
chr20 1205623 1.87% 883
chr21 449095 0.96% 346
chr22 1049062 2.06% 791
chr22_KI270733v1_random 519 0.29% 1
chrUn_GL000195v1 2364 1.29% 4
chrUn_GL000219v1 3614 2.02% 3
chrX 1314472 0.84% 868
chrY 43966 0.08% 23
3335 contigs with no values (128091123 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33753 210 29553 1434.01 913
global segment-length histogram

Files

Filename Size md5
ENCFF026OAP.bed.gz 889.58 KB e5d5dbfb208915518e6f36148ee5a29c
ENCFF026OAP.tabix.bed.gz 389.11 KB 192375db100baed43a3ff32732fdd430
ENCFF026OAP.tabix.bed.gz.tbi 175.83 KB eca20d9054df6526c668c14284cc9442
genomic_resource.yaml 1.46 KB aa5783a6224a1637a3ed520062b01a36
statistics/