Histone_ChIP-seq_ENCSR121CWP
Histone_ChIP-seq ENCSR121CWP [biosample_summary="Homo sapiens HAP-1" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR121CWP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR121CWP [biosamplesummary="Homo sapiens HAP-1" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN767AJL|/analyses/ENCAN767AJL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF216JJJ|/files/ENCFF216JJJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF216JJJ|/files/ENCFF216JJJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.71. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF146XNB|/files/ENCFF146XNB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF146XNB|/files/ENCFF146XNB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.31. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR121CWP | float |
Histone_ChIP-seq_ENCSR121CWP |
Histone_ChIP-seq ENCSR121CWP [biosample_summary="Homo sapiens HAP-1" and target="H3K36me3"]
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[1.42, 16.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF979TPN.bed.gz | 2.1 MB | 1ba64c64576dd217dd5c656cef289929 |
| ENCFF979TPN.bed.gz.dvc | 101.0 B | 2c575a616aa92ee17c4af319f8de05b4 |
| ENCFF979TPN.tabix.bed.gz | 997.34 KB | 3c38ba59c34dfa5520c0969f0d78c86a |
| ENCFF979TPN.tabix.bed.gz.dvc | 107.0 B | c5cdd0c10c870116b35b4cef5e5a5f80 |
| ENCFF979TPN.tabix.bed.gz.tbi | 145.18 KB | f0a2673a0ffdb5610ef9a1f4d640916e |
| ENCFF979TPN.tabix.bed.gz.tbi.dvc | 110.0 B | 382f985c26a46513a584e07bd27548ed |
| genomic_resource.yaml | 3.99 KB | e461926685686a9f139884224a960ca7 |
| genomic_resource_original.yaml | 3.89 KB | 7de04d84cc23e09a6b736754db6b37dc |
| statistics/ |