Resource

Id Histone_ChIP-seq/ENCSR120ZZJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR120ZZJ [biosample_summary="Homo sapiens placenta tissue embryo (16 weeks)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR120ZZJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue embryo (16 weeks)
  • date_created: 2017-03-22T16:16:58.028595+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR120ZZJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR120ZZJ float

Histone_ChIP-seq_ENCSR120ZZJ
Histone_ChIP-seq ENCSR120ZZJ [biosample_summary="Homo sapiens placenta tissue embryo (16 weeks)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR120ZZJ [2.08, 62.4]
n
36,630,870
mean
24.2
sd
13.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 366308701.14% 24257
chr1 3653416 1.47% 2418
chr2 2459301 1.02% 1612
chr3 2064540 1.04% 1327
chr4 1468576 0.77% 966
chr5 1761246 0.97% 1090
chr6 2216839 1.30% 1445
chr7 1863805 1.17% 1269
chr8 1317009 0.91% 862
chr9 1478848 1.07% 1009
chr10 1533672 1.15% 1023
chr11 1959509 1.45% 1243
chr12 1924322 1.44% 1271
chr13 734401 0.64% 491
chr14 1182837 1.11% 757
chr15 1193217 1.17% 818
chr16 1424858 1.58% 946
chr17 2167573 2.60% 1413
chr18 576373 0.72% 405
chr19 2532870 4.32% 1710
chr20 888127 1.38% 601
chr21 365765 0.78% 245
chr22 801906 1.58% 547
chrX 1014071 0.65% 756
chrY 47789 0.08% 33
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 24257 250 18270 1510.12 1253
global segment-length histogram

Files

Filename Size md5
ENCFF972TBZ.bed.gz 640.37 KB ac54e78fc707003b52b621303fb185e2
ENCFF972TBZ.tabix.bed.gz 279.9 KB 947261be433fdc9a732003b91d700fa9
ENCFF972TBZ.tabix.bed.gz.tbi 152.16 KB 3b3ad91d74ec087d1e73ac39e994a17d
genomic_resource.yaml 1.47 KB d61b68ce90f985b9d9e1e7e0c8b41072
statistics/