Histone_ChIP-seq_ENCSR120LGC
Histone_ChIP-seq ENCSR120LGC [biosample_summary="Homo sapiens MM.1S" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR120LGC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR120LGC [biosamplesummary="Homo sapiens MM.1S" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN034NJP|/analyses/ENCAN034NJP/} has in progress subobject document {f88db475-68b9-4cb1-a8a1-f8c7c2c0424c|/documents/f88db475-68b9-4cb1-a8a1-f8c7c2c0424c/} audit_internal_action: Released analysis {ENCAN034NJP|/analyses/ENCAN034NJP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF140EJX|/files/ENCFF140EJX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19582393 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF140EJX|/files/ENCFF140EJX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF140EJX|/files/ENCFF140EJX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.81. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR120LGC | float |
Histone_ChIP-seq_ENCSR120LGC |
Histone_ChIP-seq ENCSR120LGC [biosample_summary="Homo sapiens MM.1S" and target="H3K36me3"]
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[1.66, 8.24] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF462UOG.bed.gz | 570.83 KB | 4aef6ca8ac154b23815e8082f3a03f37 |
| ENCFF462UOG.bed.gz.dvc | 100.0 B | 9d5d7b50e3f70ebbc26fed5dbe686f04 |
| ENCFF462UOG.tabix.bed.gz | 276.51 KB | bd6f049d65e77d98e08c1ef65aaae7ea |
| ENCFF462UOG.tabix.bed.gz.dvc | 106.0 B | cab32650c1a0167e277b9e45bf8ec4c0 |
| ENCFF462UOG.tabix.bed.gz.tbi | 88.13 KB | 9e3e5166a1f57650c5bbb1cb915865f8 |
| ENCFF462UOG.tabix.bed.gz.tbi.dvc | 109.0 B | 96e1690a6589540c4e7b1848e89b85a9 |
| genomic_resource.yaml | 3.41 KB | ac01452e43c91089a5430b660443b471 |
| genomic_resource_original.yaml | 3.3 KB | 9d6a7c32a681e5bfa0e02b762bddc344 |
| statistics/ |