Resource
| Id | Histone_ChIP-seq/ENCSR117IJB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR117IJB [biosample_summary="Homo sapiens cingulate gyrus tissue female adult (75 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN931GTO|/analyses/ENCAN931GTO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF835EPP|/files/ENCFF835EPP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 29755016 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR117IJB | float |
Histone_ChIP-seq_ENCSR117IJB |
Histone_ChIP-seq ENCSR117IJB [biosample_summary="Homo sapiens cingulate gyrus tissue female adult (75 years)" and target="H3K4me1"]
|
 |
[1.79, 81] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 55888357 | 1.74% | 97571 |
| chr1 | 6036492 | 2.42% | 10144 |
| chr2 | 4266174 | 1.76% | 7561 |
| chr3 | 3292678 | 1.66% | 6049 |
| chr4 | 1884076 | 0.99% | 3635 |
| chr5 | 2842593 | 1.57% | 5267 |
| chr6 | 2833535 | 1.66% | 5296 |
| chr7 | 2390793 | 1.50% | 4475 |
| chr8 | 2067154 | 1.42% | 3841 |
| chr9 | 2848050 | 2.06% | 4755 |
| chr10 | 3148208 | 2.35% | 5289 |
| chr11 | 3793159 | 2.81% | 6366 |
| chr12 | 2414134 | 1.81% | 4279 |
| chr13 | 1127220 | 0.99% | 2183 |
| chr14 | 1993781 | 1.86% | 3505 |
| chr15 | 2044476 | 2.00% | 3594 |
| chr16 | 2105031 | 2.33% | 3512 |
| chr17 | 3345739 | 4.02% | 5302 |
| chr18 | 1107360 | 1.38% | 2094 |
| chr19 | 2047337 | 3.49% | 3213 |
| chr20 | 1798193 | 2.79% | 2955 |
| chr21 | 513014 | 1.10% | 961 |
| chr22 | 1656921 | 3.26% | 2561 |
| chrX | 332239 | 0.21% | 734 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 97571 | 150 | 9412 | 572.8 | 457 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF957RKQ.bed.gz | 1.83 MB | dc778ee9d86dbc08744dc9399e5e293d |
| ENCFF957RKQ.tabix.bed.gz | 947.29 KB | 4c7900ba96017134a1cdf59a02bb8ced |
| ENCFF957RKQ.tabix.bed.gz.tbi | 281.4 KB | 28df8189a199a759b935cf6364fe6dec |
| genomic_resource.yaml | 2.01 KB | fe65174285f3c7e912f969aab7507454 |
| statistics/ |