Histone_ChIP-seq_ENCSR115GFR
Histone_ChIP-seq ENCSR115GFR [biosample_summary="Homo sapiens T-cell male adult (21 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR115GFR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR115GFR [biosamplesummary="Homo sapiens T-cell male adult (21 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN644MDE|/analyses/ENCAN644MDE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN644MDE|/analyses/ENCAN644MDE/} has in progress subobject document {6427d824-f757-45b4-98fb-56eb69e2e187|/documents/6427d824-f757-45b4-98fb-56eb69e2e187/} audit_warning: Processed unfiltered alignments file {ENCFF049ILC|/files/ENCFF049ILC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 39683889 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF430GNL|/files/ENCFF430GNL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF430GNL|/files/ENCFF430GNL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.75. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR115GFR | float |
Histone_ChIP-seq_ENCSR115GFR |
Histone_ChIP-seq ENCSR115GFR [biosample_summary="Homo sapiens T-cell male adult (21 years)" and target="H3K9me3"]
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[2.07, 76.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF286MGD.bed.gz | 652.05 KB | e7cd5f622620deca4007b5db8c8ea1cf |
| ENCFF286MGD.bed.gz.dvc | 100.0 B | a8214efb1a650c3b5a6a6d9eccff9b1e |
| ENCFF286MGD.tabix.bed.gz | 326.22 KB | 2c76c34f003c09406751d9a0b0b53412 |
| ENCFF286MGD.tabix.bed.gz.dvc | 106.0 B | 68af9d16af2a6da143e4ca746a6fded5 |
| ENCFF286MGD.tabix.bed.gz.tbi | 181.7 KB | 6f506dfe07d0b7533bc9f5cba3614b14 |
| ENCFF286MGD.tabix.bed.gz.tbi.dvc | 110.0 B | f979515966938823206a161fc86cd634 |
| genomic_resource.yaml | 3.43 KB | ba18a5eccf7a6ea844546b0cd67f9035 |
| genomic_resource_original.yaml | 3.3 KB | 0b0cbbbdc6a8031be0711b038c634ecf |
| statistics/ |