Resource
| Id | Histone_ChIP-seq/ENCSR115BXL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR115BXL [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN623FIT|/analyses/ENCAN623FIT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF618YTZ|/files/ENCFF618YTZ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 40869241 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR115BXL | float |
Histone_ChIP-seq_ENCSR115BXL |
Histone_ChIP-seq ENCSR115BXL [biosample_summary="Homo sapiens foreskin keratinocyte male newborn" and target="H3K4me1"]
|
 |
[1.62, 19] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 170759442 | 5.31% | 173934 |
| chr1 | 17840649 | 7.17% | 17068 |
| chr2 | 14096893 | 5.82% | 14456 |
| chr3 | 11209704 | 5.65% | 11552 |
| chr4 | 7748786 | 4.07% | 8728 |
| chr5 | 8980494 | 4.95% | 9537 |
| chr6 | 9921956 | 5.81% | 10537 |
| chr7 | 7964910 | 5.00% | 8649 |
| chr8 | 7448997 | 5.13% | 7679 |
| chr9 | 7481220 | 5.41% | 7379 |
| chr10 | 8203544 | 6.13% | 8334 |
| chr11 | 9200345 | 6.81% | 8920 |
| chr12 | 8587656 | 6.44% | 8859 |
| chr13 | 3768528 | 3.30% | 4281 |
| chr14 | 5622545 | 5.25% | 5619 |
| chr15 | 5972158 | 5.86% | 5841 |
| chr16 | 5779456 | 6.40% | 5409 |
| chr17 | 8315164 | 9.99% | 7693 |
| chr18 | 3652266 | 4.54% | 3945 |
| chr19 | 5756682 | 9.82% | 5569 |
| chr20 | 4830517 | 7.50% | 4734 |
| chr21 | 2061799 | 4.41% | 2091 |
| chr22 | 3945077 | 7.76% | 3567 |
| chrX | 2236987 | 1.43% | 3270 |
| chrY | 133109 | 0.23% | 217 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 173934 | 220 | 32013 | 981.75 | 731 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF322VKT.bed.gz | 3.97 MB | dafca07b848470f67bcdf95f25ca754e |
| ENCFF322VKT.tabix.bed.gz | 1.81 MB | d3970f74daa72f47102dc6f2252a596b |
| ENCFF322VKT.tabix.bed.gz.tbi | 414.09 KB | fd7e2423211989b3fd3cf6bec399dcbf |
| genomic_resource.yaml | 1.96 KB | e3f6f93f69ca4884000d344507c397ad |
| statistics/ |