Histone_ChIP-seq_ENCSR114YOX
Histone_ChIP-seq ENCSR114YOX [biosample_summary="Homo sapiens BE2C" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR114YOX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR114YOX [biosamplesummary="Homo sapiens BE2C" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN011MKF|/analyses/ENCAN011MKF/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF576GWJ|/files/ENCFF576GWJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF576GWJ|/files/ENCFF576GWJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.50. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF233OXP|/files/ENCFF233OXP/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF233OXP|/files/ENCFF233OXP/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.11. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR114YOX | float |
Histone_ChIP-seq_ENCSR114YOX |
Histone_ChIP-seq ENCSR114YOX [biosample_summary="Homo sapiens BE2C" and target="H3K36me3"]
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[1.18, 8.62] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF098GTL.bed.gz | 1.94 MB | 65c5869e5cc5e48ee69ba0fe6bcf9bea |
| ENCFF098GTL.bed.gz.dvc | 101.0 B | 50c55939f009e3b08dfe1fe0b3827033 |
| ENCFF098GTL.tabix.bed.gz | 906.65 KB | 25220315f13715ae1a45009f4a622953 |
| ENCFF098GTL.tabix.bed.gz.dvc | 106.0 B | 37b94f50da7d51be7a19eae052023568 |
| ENCFF098GTL.tabix.bed.gz.tbi | 134.73 KB | 811359b1e003eda5bf3f31aa0a1fc3d3 |
| ENCFF098GTL.tabix.bed.gz.tbi.dvc | 110.0 B | ef669b9f7ffe174c729bc25aade88137 |
| genomic_resource.yaml | 4.0 KB | 2905e53a28d17bac034a3c9c9624e560 |
| genomic_resource_original.yaml | 3.89 KB | 3563480f408922502e01512834af0e88 |
| statistics/ |