Resource
| Id | Histone_ChIP-seq/ENCSR113OKR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR113OKR [biosample_summary="Homo sapiens temporal lobe tissue male adult (81 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (81 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN505ZLW|/analyses/ENCAN505ZLW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF628UNN|/files/ENCFF628UNN/} processed by ChIP-seq ENCODE3 hg19 pipeline has 22177251 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR113OKR | float |
Histone_ChIP-seq_ENCSR113OKR |
Histone_ChIP-seq ENCSR113OKR [biosample_summary="Homo sapiens temporal lobe tissue male adult (81 years)" and target="H3K36me3"]
|
 |
[1.82, 19.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 64193624 | 2.00% | 73643 |
| chr1 | 6675965 | 2.68% | 7476 |
| chr2 | 4367429 | 1.80% | 5363 |
| chr3 | 3773208 | 1.90% | 4438 |
| chr4 | 1982897 | 1.04% | 2613 |
| chr5 | 2721103 | 1.50% | 3385 |
| chr6 | 2698384 | 1.58% | 3236 |
| chr7 | 2659811 | 1.67% | 3230 |
| chr8 | 1853972 | 1.28% | 2388 |
| chr9 | 3080766 | 2.23% | 3345 |
| chr10 | 2535056 | 1.89% | 3135 |
| chr11 | 3730469 | 2.76% | 4035 |
| chr12 | 3608382 | 2.71% | 3989 |
| chr13 | 1073413 | 0.94% | 1445 |
| chr14 | 2119926 | 1.98% | 2577 |
| chr15 | 2350933 | 2.31% | 2766 |
| chr16 | 3401565 | 3.77% | 3614 |
| chr17 | 4193282 | 5.04% | 4438 |
| chr18 | 854272 | 1.06% | 1135 |
| chr19 | 4621509 | 7.88% | 4680 |
| chr20 | 2361382 | 3.66% | 2467 |
| chr21 | 794658 | 1.70% | 908 |
| chr22 | 2101471 | 4.14% | 2116 |
| chrX | 611865 | 0.39% | 836 |
| chrY | 21906 | 0.04% | 28 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 73643 | 240 | 13790 | 871.69 | 672 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF052GKS.bed.gz | 1.44 MB | c1b86ca63e3854e5a15189e642b8d981 |
| ENCFF052GKS.tabix.bed.gz | 736.09 KB | 9da51369c4acbe6e7fc1f0519c01068f |
| ENCFF052GKS.tabix.bed.gz.tbi | 157.79 KB | 90ab9620ebc57a3eacb725d34ebbb758 |
| genomic_resource.yaml | 2.0 KB | 8ed46120badad6a67a0a66ecdcc14dfe |
| statistics/ |