Histone_ChIP-seq_ENCSR111WGZ
Histone_ChIP-seq ENCSR111WGZ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (34 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR111WGZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR111WGZ [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (34 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN675GER|/analyses/ENCAN675GER/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN675GER|/analyses/ENCAN675GER/} has in progress subobject document {a94b3c75-e250-4ee3-936e-9692bd27b530|/documents/a94b3c75-e250-4ee3-936e-9692bd27b530/} audit_not_compliant: Processed alignments file {ENCFF018JTV|/files/ENCFF018JTV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 26166780 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF018JTV|/files/ENCFF018JTV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF018JTV|/files/ENCFF018JTV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.65. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR111WGZ | float |
Histone_ChIP-seq_ENCSR111WGZ |
Histone_ChIP-seq ENCSR111WGZ [biosample_summary="Homo sapiens heart left ventricle tissue male adult (34 years)" and target="H3K4me1"]
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[1.61, 20.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF569RXT.bed.gz | 3.09 MB | 25e198d80cf15c620eeb8a59b3de8495 |
| ENCFF569RXT.bed.gz.dvc | 101.0 B | 66bdca6290c28a3108e6be6d4d779f28 |
| ENCFF569RXT.tabix.bed.gz | 1.45 MB | 91ddd764ace2cec6b37e562ab23568d4 |
| ENCFF569RXT.tabix.bed.gz.dvc | 107.0 B | 54219750db05010ed418bb8db30a23a8 |
| ENCFF569RXT.tabix.bed.gz.tbi | 350.83 KB | f697150bee1aedc071007686793581e0 |
| ENCFF569RXT.tabix.bed.gz.tbi.dvc | 110.0 B | eb8eba9387b44e258d8d7b25ece01c20 |
| genomic_resource.yaml | 3.49 KB | ef7596e2ebaedfe9f24526216038ec03 |
| genomic_resource_original.yaml | 3.35 KB | 37ffcfbe78206cbaab492376cda7a31f |
| statistics/ |