Histone_ChIP-seq_ENCSR111OHT
Histone_ChIP-seq ENCSR111OHT [biosample_summary="Homo sapiens liver tissue male adult (31 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR111OHT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR111OHT [biosamplesummary="Homo sapiens liver tissue male adult (31 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (31 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN880YSQ|/analyses/ENCAN880YSQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF670OBN|/files/ENCFF670OBN/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 34093498 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF670OBN|/files/ENCFF670OBN/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF670OBN|/files/ENCFF670OBN/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.65. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR111OHT | float |
Histone_ChIP-seq_ENCSR111OHT |
Histone_ChIP-seq ENCSR111OHT [biosample_summary="Homo sapiens liver tissue male adult (31 years)" and target="H3K4me1"]
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[1.84, 18.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF953NPP.bed.gz | 1.94 MB | e16b46f3ea3219ce473d347de79df836 |
| ENCFF953NPP.bed.gz.dvc | 101.0 B | 55cf1bcf021874925924f7bf7a9fb4c2 |
| ENCFF953NPP.tabix.bed.gz | 1014.14 KB | 813e89f2899822dfd4c4dc2701bca96e |
| ENCFF953NPP.tabix.bed.gz.dvc | 107.0 B | 366ccdfa85e7d105dc132b39f02e92e1 |
| ENCFF953NPP.tabix.bed.gz.tbi | 279.82 KB | 4734d8e08a78e554f9db930536d40733 |
| ENCFF953NPP.tabix.bed.gz.tbi.dvc | 110.0 B | 0c728c1365013b0c3c2609426f695bf0 |
| genomic_resource.yaml | 3.26 KB | 5a28be000787ee5ea2561857a850d012 |
| genomic_resource_original.yaml | 3.13 KB | fa887c3b3ab37fae9e097c9bab81eed7 |
| statistics/ |