Resource

Id Histone_ChIP-seq/ENCSR111KKCcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR111KKC [biosample_summary="Homo sapiens lung tissue female embryo (120 days)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR111KKC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002048/
  • biosample_summary: Homo sapiens lung tissue female embryo (120 days)
  • date_created: 2015-09-15T19:52:10.470538+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR111KKC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (120 days)
  • status: released
  • submitter_comment: As of June 22, 2017, this experiment's biosample (and donor) has been changed. A SNP-analysis shows that the original donor (ENCDO308YQF) was incorrect. 10/27/17: Control biosample.summary does not match Experiment (former control: ENCSR724XIL).
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR111KKC float

Histone_ChIP-seq_ENCSR111KKC
Histone_ChIP-seq ENCSR111KKC [biosample_summary="Homo sapiens lung tissue female embryo (120 days)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR111KKC [1.83, 28.4]
n
26,918,329
mean
6.61
sd
3.36

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 269183290.84% 48364
chr1 2061727 0.83% 3313
chr1_KI270713v1_random 3709 9.10% 5
chr2 1638271 0.68% 2450
chr3 1076044 0.54% 1774
chr4 1031853 0.54% 1507
chr5 1329415 0.73% 1968
chr6 1591475 0.93% 2222
chr7 1060921 0.67% 1564
chr8 1019099 0.70% 1647
chr9 938981 0.68% 1529
chr9_KI270718v1_random 301 0.79% 1
chr10 1311294 0.98% 2151
chr11 1108074 0.82% 1866
chr12 1139975 0.86% 1841
chr13 667213 0.58% 1018
chr14 822668 0.77% 1306
chr15 689191 0.68% 1102
chr16 690544 0.76% 1245
chr17 1102330 1.32% 1924
chr18 470499 0.59% 803
chr19 748727 1.28% 1448
chr20 802122 1.24% 1457
chr21 213225 0.46% 332
chr22 382882 0.75% 821
chrX 5017789 3.22% 13070
3341 contigs with no values (186225701 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 48364 160 19119 556.58 370
global segment-length histogram

Files

Filename Size md5
ENCFF257ACE.bed.gz 926.26 KB 2ff9d2025ab2258e820de6cc4a0272ab
ENCFF257ACE.tabix.bed.gz 467.44 KB ac724e8536c9dd7626408501a5e38829
ENCFF257ACE.tabix.bed.gz.tbi 135.86 KB 5b217040719fc1d8b69d73d75527864c
genomic_resource.yaml 2.24 KB 4a5b17d97f0cce68d869ced296ae221e
statistics/