Resource
| Id | Histone_ChIP-seq/ENCSR108NVQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR108NVQ [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN994HNZ|/analyses/ENCAN994HNZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF868WOD|/files/ENCFF868WOD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15356111 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR108NVQ | float |
Histone_ChIP-seq_ENCSR108NVQ |
Histone_ChIP-seq ENCSR108NVQ [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27ac"]
|
 |
[1.96, 70.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 53570116 | 1.67% | 62204 |
| chr1 | 5196466 | 2.09% | 5830 |
| chr1_KI270712v1_random | 401 | 0.23% | 1 |
| chr1_KI270713v1_random | 395 | 0.97% | 1 |
| chr2 | 3982946 | 1.64% | 4903 |
| chr3 | 3258883 | 1.64% | 3953 |
| chr4 | 1973050 | 1.04% | 2550 |
| chr5 | 2759687 | 1.52% | 3297 |
| chr6 | 3027058 | 1.77% | 3599 |
| chr7 | 2628970 | 1.65% | 3170 |
| chr8 | 2194844 | 1.51% | 2650 |
| chr9 | 2361119 | 1.71% | 2754 |
| chr10 | 2533345 | 1.89% | 2979 |
| chr11 | 3028660 | 2.24% | 3304 |
| chr12 | 3044381 | 2.28% | 3477 |
| chr13 | 1099637 | 0.96% | 1422 |
| chr14 | 1562836 | 1.46% | 1800 |
| chr15 | 1768269 | 1.73% | 2114 |
| chr16 | 2045846 | 2.26% | 2211 |
| chr17 | 3107687 | 3.73% | 3289 |
| chr17_GL000205v2_random | 653 | 0.35% | 1 |
| chr18 | 861296 | 1.07% | 1090 |
| chr19 | 2979128 | 5.08% | 3007 |
| chr20 | 1510922 | 2.34% | 1732 |
| chr21 | 514038 | 1.10% | 630 |
| chr22 | 1257947 | 2.48% | 1375 |
| chrM | 295 | 1.78% | 1 |
| chrUn_GL000195v1 | 899 | 0.49% | 2 |
| chrUn_GL000219v1 | 2717 | 1.52% | 4 |
| chrUn_KI270438v1 | 1679 | 1.49% | 4 |
| chrX | 831872 | 0.53% | 1017 |
| chrY | 34190 | 0.06% | 37 |
| 3335 contigs with no values (128183538 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 62204 | 170 | 20605 | 861.2 | 599 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF378HMM.bed.gz | 1.24 MB | a3ff6282a108089bb16a53e2dadb2d36 |
| ENCFF378HMM.tabix.bed.gz | 622.41 KB | c79189a0c8d1ab61b7d601a246ff9ad5 |
| ENCFF378HMM.tabix.bed.gz.tbi | 221.06 KB | 3233bb74f7f3e0b71ff74670405a9317 |
| genomic_resource.yaml | 1.95 KB | 6fa363bcc1de5685cd44a713c9567077 |
| statistics/ |