Histone_ChIP-seq_ENCSR107RDP
Histone_ChIP-seq ENCSR107RDP [biosample_summary="Homo sapiens heart right ventricle tissue male child (3 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR107RDP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR107RDP [biosamplesummary="Homo sapiens heart right ventricle tissue male child (3 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male child (3 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN458OED|/analyses/ENCAN458OED/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF897OOT|/files/ENCFF897OOT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF897OOT|/files/ENCFF897OOT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.75. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR107RDP | float |
Histone_ChIP-seq_ENCSR107RDP |
Histone_ChIP-seq ENCSR107RDP [biosample_summary="Homo sapiens heart right ventricle tissue male child (3 years)" and target="H3K4me3"]
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[1.93, 82.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF786ACC.bed.gz | 754.63 KB | 2abdd959c37a56232321a12e70493f86 |
| ENCFF786ACC.bed.gz.dvc | 100.0 B | c1de99325e5071091e395ff7ece08e9d |
| ENCFF786ACC.tabix.bed.gz | 315.13 KB | 3d1c4c93950c4c3d2ea67923548a02d9 |
| ENCFF786ACC.tabix.bed.gz.dvc | 106.0 B | e35086a186fd5f885cd66442c9fdf8a1 |
| ENCFF786ACC.tabix.bed.gz.tbi | 156.44 KB | 775509e931ce5dc949742ebf95f8cf3f |
| ENCFF786ACC.tabix.bed.gz.tbi.dvc | 110.0 B | 951b6b0dc30541a6930f37ebffe0dc14 |
| genomic_resource.yaml | 2.78 KB | 7e3f84eab3378244c29be06b9b8b6842 |
| genomic_resource_original.yaml | 2.63 KB | 8c864b88623d7cb6480d71a517732337 |
| statistics/ |