Resource
| Id | Histone_ChIP-seq/ENCSR106VNH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR106VNH [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN997JKH|/analyses/ENCAN997JKH/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF706MED|/files/ENCFF706MED/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 5577515 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF003DAA|/files/ENCFF003DAA/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 5565033 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR106VNH | float |
Histone_ChIP-seq_ENCSR106VNH |
Histone_ChIP-seq ENCSR106VNH [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive" and target="H3K36me3"]
|
 |
[2, 11.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 42904809 | 1.33% | 121516 |
| chr1 | 4404520 | 1.77% | 12368 |
| chr2 | 3735443 | 1.54% | 10615 |
| chr3 | 3023692 | 1.52% | 8501 |
| chr4 | 1934560 | 1.02% | 5559 |
| chr5 | 2382101 | 1.31% | 6725 |
| chr6 | 2144299 | 1.26% | 6196 |
| chr7 | 2043105 | 1.28% | 5954 |
| chr8 | 1599330 | 1.10% | 4714 |
| chr9 | 1858031 | 1.34% | 5230 |
| chr10 | 1878303 | 1.40% | 5411 |
| chr11 | 2004916 | 1.48% | 5650 |
| chr12 | 2433977 | 1.83% | 6770 |
| chr13 | 1026880 | 0.90% | 2934 |
| chr14 | 1420253 | 1.33% | 4064 |
| chr15 | 1706607 | 1.67% | 4841 |
| chr16 | 1483036 | 1.64% | 4174 |
| chr17 | 1963258 | 2.36% | 5507 |
| chr18 | 815091 | 1.01% | 2336 |
| chr19 | 2070675 | 3.53% | 5153 |
| chr20 | 1113326 | 1.73% | 3144 |
| chr21 | 509752 | 1.09% | 1435 |
| chr22 | 807204 | 1.59% | 2337 |
| chrX | 531143 | 0.34% | 1840 |
| chrY | 15307 | 0.03% | 58 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 121516 | 165 | 4944 | 353.08 | 287 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF008VXT.bed.gz | 1.89 MB | daf9c66a6dde6e80336f4170ff074147 |
| ENCFF008VXT.tabix.bed.gz | 1.05 MB | 325bb871d44e73659d431523d27157f5 |
| ENCFF008VXT.tabix.bed.gz.tbi | 211.29 KB | f2a0c5e7a51a69179efd7e4e2d6a3b23 |
| genomic_resource.yaml | 2.59 KB | f83f3152e094bb86f6865b36ebb87a64 |
| statistics/ |