Resource

Id Histone_ChIP-seq/ENCSR106GXJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR106GXJ [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR106GXJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001226/
  • biosample_summary: Homo sapiens parathyroid adenoma tissue male adult (62 years)
  • date_created: 2014-02-20T05:41:47.194695+00:00
  • date_released: 2017-12-01
  • doi: 10.17989/ENCSR106GXJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (62 years)
  • status: released
  • submitter_comment: Read – level (FASTQ and BAM files) data will be shared with collaborating investigators who are funded by the NHGRI ENCODE project. The data will be made available using a password protected system maintained by the ENCODE data coordination center at Stanford University (https://www.encodeproject.org/), and will be clearly identified as protected human subject data. The read level data will never be released to the general scientific community nor to the general public.
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR106GXJ float

Histone_ChIP-seq_ENCSR106GXJ
Histone_ChIP-seq ENCSR106GXJ [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR106GXJ [1.71, 28.8]
n
49,321,401
mean
8.27
sd
3.89

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 493214011.53% 54765
chr1 4985669 2.00% 5332
chr2 3487324 1.44% 3928
chr3 2884805 1.45% 3157
chr4 2078988 1.09% 2264
chr5 2533659 1.40% 2765
chr6 3042965 1.78% 3222
chr7 2208674 1.39% 2511
chr8 1997800 1.38% 2282
chr9 2223454 1.61% 2478
chr10 2459531 1.84% 2806
chr11 1988958 1.47% 2445
chr12 2703386 2.03% 2915
chr13 1078154 0.94% 1278
chr14 1739982 1.63% 1842
chr15 1354932 1.33% 1581
chr16 1834919 2.03% 2108
chr17 2731023 3.28% 2867
chr17_GL000205v2_random 2528 1.36% 2
chr18 966078 1.20% 1098
chr19 2852565 4.87% 3010
chr20 1414938 2.20% 1548
chr21 446379 0.96% 531
chr22 1128955 2.22% 1299
chrUn_GL000219v1 1586 0.89% 3
chrX 1132922 0.73% 1448
chrY 41227 0.07% 45
3340 contigs with no values (128712296 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 54765 195 13021 900.6 661
global segment-length histogram

Files

Filename Size md5
ENCFF984HWV.bed.gz 1.27 MB 94cc6171191ed1039dae479a048b56ec
ENCFF984HWV.tabix.bed.gz 590.3 KB 90eba21bbf6c0115dae53fc8ff7114f8
ENCFF984HWV.tabix.bed.gz.tbi 229.58 KB 18c7cfa9271a72328e0b6414d151abe8
genomic_resource.yaml 2.04 KB 7d4729c62925b46d9b8f09c94b56b5d2
statistics/