Resource

Id Histone_ChIP-seq/ENCSR105NMJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR105NMJ [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR105NMJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0011020/
  • biosample_summary: Homo sapiens neural progenitor cell originated from H9
  • date_created: 2016-04-11T19:06:37.085027+00:00
  • date_released: 2016-06-14
  • doi: 10.17989/ENCSR105NMJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment:
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR105NMJ float

Histone_ChIP-seq_ENCSR105NMJ
Histone_ChIP-seq ENCSR105NMJ [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR105NMJ [1.42, 30.7]
n
15,395,925
mean
6.09
sd
3.65

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 153959250.48% 19980
chr1 1619288 0.65% 2119
chr2 1067671 0.44% 1380
chr3 926360 0.47% 1155
chr4 603045 0.32% 740
chr5 684785 0.38% 812
chr6 867341 0.51% 1091
chr7 761168 0.48% 984
chr8 529951 0.37% 698
chr9 616911 0.45% 830
chr10 585488 0.44% 762
chr11 843569 0.62% 1076
chr12 877331 0.66% 1098
chr13 301205 0.26% 387
chr14 562983 0.53% 739
chr15 492309 0.48% 654
chr16 677348 0.75% 933
chr17 892853 1.07% 1163
chr18 224706 0.28% 305
chr19 1040384 1.77% 1344
chr20 419260 0.65% 585
chr21 130307 0.28% 177
chr22 339454 0.67% 502
chrX 332208 0.21% 446
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 19980 185 8430 770.57 582
global segment-length histogram

Files

Filename Size md5
ENCFF946DNI.bed.gz 498.33 KB b732c30e49201bcb48130ad818d3dfed
ENCFF946DNI.tabix.bed.gz 220.73 KB 5d8d4c65b30f28c5f19f974b50aea8d8
ENCFF946DNI.tabix.bed.gz.tbi 116.72 KB 33b5d6517d52852a093c9fe493787403
genomic_resource.yaml 1.52 KB 2f24653c86a704bd931b5aad68229e1c
statistics/