Histone_ChIP-seq_ENCSR103GGR
Histone_ChIP-seq ENCSR103GGR [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (37 years)" and target="H3K27me3"]
×
| Id: | Histone_ChIP-seq/ENCSR103GGR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR103GGR [biosamplesummary="Homo sapiens CD8-positive, alpha-beta T cell male adult (37 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN976SYL|/analyses/ENCAN976SYL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF783NPA|/files/ENCFF783NPA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 6884470 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF783NPA|/files/ENCFF783NPA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF783NPA|/files/ENCFF783NPA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.50. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR103GGR | float |
Histone_ChIP-seq_ENCSR103GGR |
Histone_ChIP-seq ENCSR103GGR [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (37 years)" and target="H3K27me3"]
|
|
[2.11, 40.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF565COF.bed.gz | 447.18 KB | 99c75c8fe8995c604fc4a5ac44ec4bd2 |
| ENCFF565COF.bed.gz.dvc | 100.0 B | 024285283c7714d69d8dc6c5644ac6f3 |
| ENCFF565COF.tabix.bed.gz | 236.46 KB | fc3ab971a45ad7e72eb0c3d936446b6f |
| ENCFF565COF.tabix.bed.gz.dvc | 106.0 B | a876bed7491c9729b9b5a06d2fbf4dfb |
| ENCFF565COF.tabix.bed.gz.tbi | 122.23 KB | 7cdd4d016458948a9844a469b9fa539d |
| ENCFF565COF.tabix.bed.gz.tbi.dvc | 110.0 B | 099196dda71f48df58eca2a01cbdf3df |
| genomic_resource.yaml | 3.28 KB | 9de8d166592613b116bf15120dc45f56 |
| genomic_resource_original.yaml | 3.13 KB | efcbad7d402643b26943297597f976c9 |
| statistics/ |