Resource
| Id | Histone_ChIP-seq/ENCSR100YTJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR100YTJ [biosample_summary="Homo sapiens lung tissue female embryo (96 days)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (96 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN505IHA|/analyses/ENCAN505IHA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN505IHA|/analyses/ENCAN505IHA/} has in progress subobject document {a200af65-b26e-4c4a-8591-f5d5bf1d787c|/documents/a200af65-b26e-4c4a-8591-f5d5bf1d787c/} audit_not_compliant: Processed alignments file {ENCFF630RCZ|/files/ENCFF630RCZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 27154378 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR100YTJ | float |
Histone_ChIP-seq_ENCSR100YTJ |
Histone_ChIP-seq ENCSR100YTJ [biosample_summary="Homo sapiens lung tissue female embryo (96 days)" and target="H3K36me3"]
|
 |
[1.75, 15.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 61465105 | 1.91% | 96187 |
| chr1 | 5526843 | 2.22% | 9007 |
| chr2 | 4911061 | 2.03% | 7821 |
| chr3 | 3928819 | 1.98% | 6493 |
| chr4 | 2675853 | 1.41% | 4384 |
| chr5 | 3165586 | 1.74% | 5161 |
| chr6 | 2717804 | 1.59% | 4535 |
| chr7 | 2773824 | 1.74% | 4596 |
| chr8 | 2054427 | 1.42% | 3362 |
| chr9 | 2819590 | 2.04% | 4411 |
| chr10 | 2725389 | 2.04% | 4411 |
| chr11 | 3095782 | 2.29% | 4797 |
| chr12 | 3319287 | 2.49% | 5040 |
| chr13 | 1325410 | 1.16% | 2181 |
| chr14 | 2049207 | 1.91% | 3206 |
| chr15 | 2246321 | 2.20% | 3535 |
| chr16 | 2579731 | 2.86% | 3886 |
| chr17 | 3285814 | 3.95% | 4974 |
| chr18 | 1148006 | 1.43% | 1885 |
| chr19 | 4692968 | 8.01% | 5707 |
| chr20 | 1760701 | 2.73% | 2676 |
| chr21 | 605320 | 1.30% | 992 |
| chr22 | 1528251 | 3.01% | 2211 |
| chrX | 529111 | 0.34% | 916 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 96187 | 170 | 10566 | 639.02 | 524 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF879DLC.bed.gz | 1.78 MB | 8e5098419ad0337a3b084e34c3efc2a5 |
| ENCFF879DLC.tabix.bed.gz | 929.23 KB | 137f3a7033faa40fd64635a57feda4ed |
| ENCFF879DLC.tabix.bed.gz.tbi | 189.77 KB | 8e10c22736c6a1f4bb05d29bfd6e5bfb |
| genomic_resource.yaml | 2.19 KB | 25086d598789d71d9827f4807ca4f2c5 |
| statistics/ |