Resource

Id Histone_ChIP-seq/ENCSR100OZRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR100OZR [biosample_summary="Homo sapiens kidney tissue male adult (50 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR100OZR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue male adult (50 years)
  • date_created: 2015-09-15T19:52:20.634966+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR100OZR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (50 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR100OZR float

Histone_ChIP-seq_ENCSR100OZR
Histone_ChIP-seq ENCSR100OZR [biosample_summary="Homo sapiens kidney tissue male adult (50 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR100OZR [1.8, 59.6]
n
51,724,959
mean
17.7
sd
11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 517249591.61% 42563
chr1 5004181 2.01% 4010
chr2 3724947 1.54% 3057
chr3 3040553 1.53% 2408
chr4 2370474 1.25% 1941
chr5 2648045 1.46% 2128
chr6 3157856 1.85% 2516
chr7 2484418 1.56% 2082
chr8 1961381 1.35% 1681
chr9 2155494 1.56% 1810
chr10 2297317 1.72% 1928
chr11 2791884 2.07% 2202
chr12 2746787 2.06% 2191
chr13 1173378 1.03% 1033
chr14 1657044 1.55% 1332
chr15 1637244 1.61% 1362
chr16 1880026 2.08% 1608
chr17 2772051 3.33% 2265
chr17_GL000205v2_random 1575 0.85% 1
chr17_KI270729v1_random 571 0.20% 1
chr18 960246 1.19% 857
chr19 2882190 4.92% 2464
chr20 1247127 1.94% 1039
chr21 546796 1.17% 475
chr22 1032209 2.03% 877
chrUn_GL000216v2 457 0.26% 1
chrUn_GL000219v1 4177 2.33% 3
chrUn_KI270442v1 741 0.19% 1
chrX 1477967 0.95% 1244
chrY 67823 0.12% 46
3337 contigs with no values (127862788 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 42563 205 29400 1215.26 846
global segment-length histogram

Files

Filename Size md5
ENCFF751ZDX.bed.gz 1.06 MB 0ca131265816a48b74c01974b490c31d
ENCFF751ZDX.tabix.bed.gz 473.08 KB c7f73538a43e2df7989328dc4b21b941
ENCFF751ZDX.tabix.bed.gz.tbi 206.29 KB 1382df3736ac738c8cc58f230fcac4e7
genomic_resource.yaml 1.48 KB 491c4c0200fbd8544c7a2b2af78694c4
statistics/