Histone_ChIP-seq_ENCSR098OLN
Histone_ChIP-seq ENCSR098OLN [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (51 years)" and target="H3K4me3"]
×
| Id: | Histone_ChIP-seq/ENCSR098OLN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR098OLN [biosamplesummary="Homo sapiens gastrocnemius medialis tissue female adult (51 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (51 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN160VIW|/analyses/ENCAN160VIW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF110ZHA|/files/ENCFF110ZHA/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF018UTN|/files/ENCFF018UTN/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF018UTN|/files/ENCFF018UTN/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.66. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR098OLN | float |
Histone_ChIP-seq_ENCSR098OLN |
Histone_ChIP-seq ENCSR098OLN [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (51 years)" and target="H3K4me3"]
|
|
[1.46, 110] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF591CVB.bed.gz | 888.22 KB | 7033b894beccc14a81e75829fd38aa8d |
| ENCFF591CVB.bed.gz.dvc | 100.0 B | 93939ef26ed511d95716ad1443ad8961 |
| ENCFF591CVB.tabix.bed.gz | 363.66 KB | 4912702affbaf9232bdbf04c00d85f03 |
| ENCFF591CVB.tabix.bed.gz.dvc | 106.0 B | 259d1be95e4c6b75ee57e76626734ab7 |
| ENCFF591CVB.tabix.bed.gz.tbi | 182.77 KB | 4b3c51bcc8083877f510ea95411f3326 |
| ENCFF591CVB.tabix.bed.gz.tbi.dvc | 110.0 B | ff9e8347f186624e5e3681470da0304e |
| genomic_resource.yaml | 3.43 KB | 299a0aeb44245c010ece981eff8395b0 |
| genomic_resource_original.yaml | 3.28 KB | 60fe9a2879425d55e151db0e81c1f822 |
| statistics/ |