Resource

Id Histone_ChIP-seq/ENCSR096EZXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR096EZX [biosample_summary="Homo sapiens kidney tissue female embryo (120 days)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR096EZX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue female embryo (120 days)
  • date_created: 2015-09-15T19:52:20.482041+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR096EZX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (120 days)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR096EZX float

Histone_ChIP-seq_ENCSR096EZX
Histone_ChIP-seq ENCSR096EZX [biosample_summary="Homo sapiens kidney tissue female embryo (120 days)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR096EZX [1.89, 71.7]
n
25,091,508
mean
16.4
sd
10.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 250915080.78% 37627
chr1 2412141 0.97% 3527
chr2 1828255 0.75% 2635
chr3 1479356 0.75% 2080
chr4 1127283 0.59% 1571
chr5 1252452 0.69% 1771
chr6 1629469 0.95% 2286
chr7 1217251 0.76% 1890
chr8 914435 0.63% 1445
chr9 976692 0.71% 1567
chr10 1096615 0.82% 1655
chr11 1314117 0.97% 1946
chr12 1424446 1.07% 2049
chr13 557708 0.49% 806
chr14 815614 0.76% 1159
chr15 826550 0.81% 1246
chr16 862817 0.96% 1423
chr17 1330107 1.60% 2126
chr18 439115 0.55% 695
chr19 1470950 2.51% 2282
chr20 582819 0.90% 928
chr21 242343 0.52% 446
chr22 453280 0.89% 766
chrX 837693 0.54% 1328
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37627 150 9672 666.85 446
global segment-length histogram

Files

Filename Size md5
ENCFF555AYT.bed.gz 827.39 KB 4905d5e0843e4be6524b747064e57742
ENCFF555AYT.tabix.bed.gz 394.76 KB 0715a3aa4f357cf94ac04b1fbd1cfc40
ENCFF555AYT.tabix.bed.gz.tbi 159.93 KB 791c1737fd78aed49bb3e0c57b74eab1
genomic_resource.yaml 1.5 KB 7cb8881e4f0a90d7a6827729a8cfd79b
statistics/