Histone_ChIP-seq_ENCSR095YMD
Histone_ChIP-seq ENCSR095YMD [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue female adult (53 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR095YMD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR095YMD [biosamplesummary="Homo sapiens esophagus muscularis mucosa tissue female adult (53 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN929QFG|/analyses/ENCAN929QFG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF065VYW|/files/ENCFF065VYW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF065VYW|/files/ENCFF065VYW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.38. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR095YMD | float |
Histone_ChIP-seq_ENCSR095YMD |
Histone_ChIP-seq ENCSR095YMD [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue female adult (53 years)" and target="H3K27ac"]
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[1.63, 96.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF484GTZ.bed.gz | 1.64 MB | 7a9891876aa8dd158ab4df84043d7e53 |
| ENCFF484GTZ.bed.gz.dvc | 101.0 B | 25b5ebc2eec28ca03a3f7db4e00fda29 |
| ENCFF484GTZ.tabix.bed.gz | 752.8 KB | 61af81783b684bf33eaeff94e19d4676 |
| ENCFF484GTZ.tabix.bed.gz.dvc | 106.0 B | 76c66c72c9f0b14a6549ce4d4f62c596 |
| ENCFF484GTZ.tabix.bed.gz.tbi | 224.6 KB | 13b215ab140b05ba17c53f29dace8a4d |
| ENCFF484GTZ.tabix.bed.gz.tbi.dvc | 110.0 B | 94b79895b1a47e9d103604f9cd51e4ad |
| genomic_resource.yaml | 2.81 KB | c613bade4b633e563776662e5eb75c07 |
| genomic_resource_original.yaml | 2.66 KB | aaf13825a56ddd7f233bd7ab8d9cb74d |
| statistics/ |