Resource

Id Histone_ChIP-seq/ENCSR093SHEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR093SHE [biosample_summary="Homo sapiens HCT116" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR093SHE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002824/
  • biosample_summary: Homo sapiens HCT116
  • date_created: 2014-02-20T05:42:47.339309+00:00
  • date_released: 2016-12-05
  • doi: 10.17989/ENCSR093SHE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR093SHE float

Histone_ChIP-seq_ENCSR093SHE
Histone_ChIP-seq ENCSR093SHE [biosample_summary="Homo sapiens HCT116" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR093SHE [1.73, 86.8]
n
51,865,672
mean
22.6
sd
16.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 518656721.61% 34814
chr1 5173672 2.08% 3451
chr2 3440110 1.42% 2322
chr3 2835531 1.43% 1877
chr4 2237235 1.18% 1433
chr5 2118060 1.17% 1475
chr6 2913650 1.71% 1970
chr7 2527964 1.59% 1742
chr8 2184295 1.50% 1433
chr9 2061986 1.49% 1393
chr10 2465881 1.84% 1652
chr11 2750882 2.04% 1780
chr12 3072485 2.31% 1972
chr13 869231 0.76% 598
chr14 1535733 1.43% 1067
chr15 1513623 1.48% 1043
chr16 2186401 2.42% 1499
chr17 3456890 4.15% 2220
chr18 792904 0.99% 559
chr19 3180562 5.43% 2141
chr20 1494093 2.32% 1013
chr21 434485 0.93% 315
chr22 1333439 2.62% 915
chrX 1264371 0.81% 924
chrY 22189 0.04% 20
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34814 223 18370 1489.79 1148.5
global segment-length histogram

Files

Filename Size md5
ENCFF105NDA.bed.gz 954.95 KB e4b14ca34a89a44938ca138a956dc11f
ENCFF105NDA.tabix.bed.gz 401.51 KB 68445c8bdef8a68e1e4fc89f42943c94
ENCFF105NDA.tabix.bed.gz.tbi 159.65 KB a4b625faf39d83bcfda5eba2c18efeb6
genomic_resource.yaml 1.59 KB 979c0f74ca0664d2d7d60a94770ebaba
statistics/