Resource
| Id | Histone_ChIP-seq/ENCSR091QXP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR091QXP [biosample_summary="Homo sapiens HCT116" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN624IUA|/analyses/ENCAN624IUA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN624IUA|/analyses/ENCAN624IUA/} has in progress subobject document {1e2da7bb-8e9e-4094-85b8-ce974f60b158|/documents/1e2da7bb-8e9e-4094-85b8-ce974f60b158/} audit_not_compliant: Processed alignments file {ENCFF702LON|/files/ENCFF702LON/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 20329316 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF688WBJ|/files/ENCFF688WBJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 21967401 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR091QXP | float |
Histone_ChIP-seq_ENCSR091QXP |
Histone_ChIP-seq ENCSR091QXP [biosample_summary="Homo sapiens HCT116" and target="H3K36me3"]
|
 |
[1.75, 15.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 57903440 | 1.80% | 68397 |
| chr1 | 5783124 | 2.32% | 6726 |
| chr2 | 4058575 | 1.68% | 5024 |
| chr3 | 3428251 | 1.73% | 4266 |
| chr4 | 2103171 | 1.11% | 2653 |
| chr5 | 2755733 | 1.52% | 3361 |
| chr6 | 2486460 | 1.46% | 3049 |
| chr7 | 2616833 | 1.64% | 3171 |
| chr8 | 2534952 | 1.75% | 2945 |
| chr9 | 2351800 | 1.70% | 2754 |
| chr10 | 2881616 | 2.15% | 3258 |
| chr11 | 2960136 | 2.19% | 3396 |
| chr12 | 3378856 | 2.54% | 3871 |
| chr13 | 1021088 | 0.89% | 1341 |
| chr14 | 1719124 | 1.61% | 2181 |
| chr15 | 1953048 | 1.91% | 2413 |
| chr16 | 2869164 | 3.18% | 3169 |
| chr17 | 4164302 | 5.00% | 4428 |
| chr18 | 811746 | 1.01% | 1075 |
| chr19 | 3414346 | 5.82% | 3814 |
| chr20 | 1923033 | 2.98% | 2155 |
| chr21 | 670348 | 1.44% | 783 |
| chr22 | 1524340 | 3.00% | 1804 |
| chrX | 493394 | 0.32% | 760 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 68397 | 210 | 12591 | 846.58 | 648 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF137TPC.bed.gz | 1.41 MB | bd076c781f817a09cc00c402c19316ac |
| ENCFF137TPC.tabix.bed.gz | 694.17 KB | b4161dbdd508df43ba965f5fa4828a1f |
| ENCFF137TPC.tabix.bed.gz.tbi | 130.39 KB | 37c94a4a7f7a38fb8eda87f6e91840b7 |
| genomic_resource.yaml | 2.8 KB | 828327640c1d1201bef8162171e660b9 |
| statistics/ |