Resource
| Id | Histone_ChIP-seq/ENCSR090QTV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR090QTV [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN950QYY|/analyses/ENCAN950QYY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed unfiltered alignments file {ENCFF448CAM|/files/ENCFF448CAM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 40690256 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF243NVU|/files/ENCFF243NVU/} processed by ChIP-seq ENCODE3 hg19 pipeline has 40237142 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR090QTV | float |
Histone_ChIP-seq_ENCSR090QTV |
Histone_ChIP-seq ENCSR090QTV [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K9me3"]
|
 |
[1.38, 7.66] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 21775599 | 0.68% | 37134 |
| chr1 | 1337951 | 0.54% | 2552 |
| chr2 | 1203218 | 0.50% | 2278 |
| chr3 | 855342 | 0.43% | 1619 |
| chr4 | 1187903 | 0.62% | 2052 |
| chr5 | 1239929 | 0.68% | 2148 |
| chr6 | 809710 | 0.47% | 1536 |
| chr7 | 1568687 | 0.98% | 2413 |
| chr8 | 1024104 | 0.71% | 1824 |
| chr9 | 715638 | 0.52% | 1269 |
| chr10 | 892034 | 0.67% | 1620 |
| chr11 | 1046045 | 0.77% | 1825 |
| chr12 | 1029620 | 0.77% | 1607 |
| chr13 | 413759 | 0.36% | 804 |
| chr14 | 648265 | 0.61% | 1151 |
| chr15 | 730544 | 0.72% | 1202 |
| chr16 | 657405 | 0.73% | 1018 |
| chr17 | 347233 | 0.42% | 621 |
| chr18 | 337731 | 0.42% | 624 |
| chr19 | 2938736 | 5.01% | 3466 |
| chr20 | 296687 | 0.46% | 565 |
| chr21 | 543200 | 1.16% | 775 |
| chr22 | 121713 | 0.24% | 241 |
| chrX | 1754179 | 1.12% | 3785 |
| chrY | 75966 | 0.13% | 139 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 37134 | 180 | 14706 | 586.41 | 460 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF081VFH.bed.gz | 710.2 KB | 9b5f9e3dda6ad6a1f695523ef10cd775 |
| ENCFF081VFH.tabix.bed.gz | 362.96 KB | 06349f876f1f6cdf7b3ed67b72cbe87c |
| ENCFF081VFH.tabix.bed.gz.tbi | 165.6 KB | 5f294487dbc5f6d1fa4cfd3030eb9bbb |
| genomic_resource.yaml | 2.46 KB | 95563299fb50f5f073abc3d44e2615fa |
| statistics/ |