Histone_ChIP-seq_ENCSR088GXB
Histone_ChIP-seq ENCSR088GXB [biosample_summary="Homo sapiens esophagus tissue male adult (34 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR088GXB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR088GXB [biosamplesummary="Homo sapiens esophagus tissue male adult (34 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN568CGE|/analyses/ENCAN568CGE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN568CGE|/analyses/ENCAN568CGE/} has in progress subobject document {7bbc33e3-6e60-4889-ad61-3e96f1b3fe2d|/documents/7bbc33e3-6e60-4889-ad61-3e96f1b3fe2d/} audit_not_compliant: Processed alignments file {ENCFF643MDE|/files/ENCFF643MDE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 23273011 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF643MDE|/files/ENCFF643MDE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF643MDE|/files/ENCFF643MDE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.38. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR088GXB | float |
Histone_ChIP-seq_ENCSR088GXB |
Histone_ChIP-seq ENCSR088GXB [biosample_summary="Homo sapiens esophagus tissue male adult (34 years)" and target="H3K27me3"]
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[1.87, 10.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF834PLN.bed.gz | 265.48 KB | acffaca473829f4d2aba62bc54b9cd95 |
| ENCFF834PLN.bed.gz.dvc | 100.0 B | a3ae50c899c2ec911843adb2b1aa0d49 |
| ENCFF834PLN.tabix.bed.gz | 135.06 KB | 482eb5de5603625f4b3927d2aa0aa30b |
| ENCFF834PLN.tabix.bed.gz.dvc | 106.0 B | 183f7c0df499381726f647bc5b5e831e |
| ENCFF834PLN.tabix.bed.gz.tbi | 71.71 KB | c675cefe9b8dea0d30641b97758f66e5 |
| ENCFF834PLN.tabix.bed.gz.tbi.dvc | 109.0 B | abb14f5ea8275d07b665d5028c5fc2d0 |
| genomic_resource.yaml | 3.47 KB | 7af46b54b7c0d8127a438441d72cbbbc |
| genomic_resource_original.yaml | 3.33 KB | 6387a144395b33748ef0b63ea9dbc04f |
| statistics/ |