Resource

Id Histone_ChIP-seq/ENCSR082NQBcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR082NQB [biosample_summary="Homo sapiens NCI-H929" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR082NQB
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001221/
  • biosample_summary: Homo sapiens NCI-H929
  • date_created: 2015-05-20T20:37:52.377048+00:00
  • date_released: 2016-10-19
  • doi: 10.17989/ENCSR082NQB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Files ENCFF614PIK, ENCFF805ITK had incorrectly identified paired_end 1 and 2 metadata respectively. They have been corrected to match its fastq file flowcell signature accordingly.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR082NQB float

Histone_ChIP-seq_ENCSR082NQB
Histone_ChIP-seq ENCSR082NQB [biosample_summary="Homo sapiens NCI-H929" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR082NQB [1.22, 30.8]
n
72,592,687
mean
10.4
sd
5.84

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 725926872.26% 52784
chr1 6937370 2.79% 4780
chr1_KI270706v1_random 1780 1.02% 3
chr1_KI270707v1_random 409 1.28% 1
chr1_KI270708v1_random 1479 1.16% 1
chr1_KI270709v1_random 1874 2.80% 1
chr1_KI270712v1_random 1529 0.87% 3
chr1_KI270713v1_random 268 0.66% 1
chr2 5456021 2.25% 4165
chr3 4923448 2.48% 3552
chr4 3639586 1.91% 3005
chr5 4535343 2.50% 3269
chr5_GL000208v1_random 1446 1.56% 2
chr6 4549574 2.66% 3266
chr7 3445179 2.16% 2697
chr8 3410477 2.35% 2707
chr9 2753942 1.99% 2068
chr9_KI270719v1_random 2216 1.25% 2
chr10 3070728 2.30% 2282
chr11 3604520 2.67% 2533
chr12 3508079 2.63% 2441
chr13 1074599 0.94% 869
chr14 2463457 2.30% 1744
chr14_GL000009v2_random 1336 0.66% 2
chr14_GL000194v1_random 1692 0.88% 4
chr14_GL000225v1_random 6778 3.21% 10
chr14_KI270722v1_random 4158 2.14% 3
chr14_KI270723v1_random 998 2.62% 1
chr14_KI270724v1_random 1402 3.54% 2
chr14_KI270725v1_random 554 0.32% 1
chr15 2380868 2.33% 1666
chr15_KI270727v1_random 1410 0.31% 3
chr16 2594540 2.87% 1767
chr17 3354553 4.03% 2095
chr17_GL000205v2_random 3558 1.92% 5
chr17_KI270729v1_random 1016 0.36% 2
chr18 1465608 1.82% 1259
chr19 3305436 5.64% 2180
chr20 1764570 2.74% 1205
chr21 801024 1.71% 663
chr22 1451609 2.86% 915
chr22_KI270732v1_random 702 1.69% 1
chr22_KI270733v1_random 2140 1.19% 5
chr22_KI270735v1_random 1203 2.81% 1
chrUn_GL000195v1 1144 0.63% 2
chrUn_GL000216v2 6296 3.56% 6
chrUn_GL000218v1 748 0.46% 2
chrUn_GL000219v1 6871 3.83% 6
chrUn_GL000220v1 698 0.43% 2
chrUn_GL000224v1 263 0.15% 1
chrUn_KI270438v1 813 0.72% 3
chrUn_KI270442v1 5380 1.37% 7
chrUn_KI270743v1 941 0.45% 1
chrUn_KI270744v1 337 0.20% 1
chrUn_KI270749v1 1412 0.89% 2
chrUn_KI270751v1 653 0.43% 2
chrX 2038652 1.31% 1567
3310 contigs with no values (180954323 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52784 240 39672 1375.28 889
global segment-length histogram

Files

Filename Size md5
ENCFF870YTV.bed.gz 1.37 MB 1fa522a595bd382ce21b252b98fd98e4
ENCFF870YTV.tabix.bed.gz 596.45 KB c74b91130a72a1fb1282808dd9656303
ENCFF870YTV.tabix.bed.gz.tbi 273.19 KB 7951d9e26b1a286c6336b218af46edfd
genomic_resource.yaml 2.05 KB b82edd1bb5e1621356561256a0b4d976
statistics/