Histone_ChIP-seq_ENCSR081JRM
Histone_ChIP-seq ENCSR081JRM [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K18ac"]
×
| Id: | Histone_ChIP-seq/ENCSR081JRM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR081JRM [biosamplesummary="Homo sapiens trophoblast cell originated from H1" and target="H3K18ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN456BPM|/analyses/ENCAN456BPM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF353QYE|/files/ENCFF353QYE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19777253 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K18ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF353QYE|/files/ENCFF353QYE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF353QYE|/files/ENCFF353QYE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.90. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF022ZHL|/files/ENCFF022ZHL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF022ZHL|/files/ENCFF022ZHL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.01. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF908OHX|/files/ENCFF908OHX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF908OHX|/files/ENCFF908OHX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.01. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR081JRM | float |
Histone_ChIP-seq_ENCSR081JRM |
Histone_ChIP-seq ENCSR081JRM [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K18ac"]
|
|
[1.68, 20.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF589PLG.bed.gz | 1.6 MB | 81e04b92d358fff9801c239825aaa24e |
| ENCFF589PLG.bed.gz.dvc | 101.0 B | 8025801d909467a47cf7b77533825062 |
| ENCFF589PLG.tabix.bed.gz | 767.79 KB | 413f0910de77d6b58d044535cb259905 |
| ENCFF589PLG.tabix.bed.gz.dvc | 106.0 B | 12736ec29e15233ee9ed8c527ca62d38 |
| ENCFF589PLG.tabix.bed.gz.tbi | 222.82 KB | 05e699bbd45475cd47ab99d709ffdb28 |
| ENCFF589PLG.tabix.bed.gz.tbi.dvc | 110.0 B | a160bf24bc9f552b5162831726870bb8 |
| genomic_resource.yaml | 5.72 KB | 20a6932557e7c8c3e04d40a09b404242 |
| genomic_resource_original.yaml | 5.59 KB | 2a224c57d8d41210bf29ab21b2c7251d |
| statistics/ |