Resource
| Id | Histone_ChIP-seq/ENCSR080XUB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR080XUB [biosample_summary="Homo sapiens CD14-positive monocyte male adult (21 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN016VWV|/analyses/ENCAN016VWV/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN016VWV|/analyses/ENCAN016VWV/} has in progress subobject document {0ee0d5cc-52af-4e47-9d91-ad88e74b5835|/documents/0ee0d5cc-52af-4e47-9d91-ad88e74b5835/} audit_not_compliant: Processed alignments file {ENCFF850DZD|/files/ENCFF850DZD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 22268131 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR080XUB | float |
Histone_ChIP-seq_ENCSR080XUB |
Histone_ChIP-seq ENCSR080XUB [biosample_summary="Homo sapiens CD14-positive monocyte male adult (21 years)" and target="H3K27me3"]
|
 |
[1.91, 31.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 55078075 | 1.71% | 59012 |
| chr1 | 5608134 | 2.25% | 5820 |
| chr2 | 4101675 | 1.69% | 4364 |
| chr3 | 2377383 | 1.20% | 2517 |
| chr4 | 2212680 | 1.16% | 2270 |
| chr5 | 3343884 | 1.84% | 3463 |
| chr6 | 3505369 | 2.05% | 3585 |
| chr7 | 2717221 | 1.71% | 2708 |
| chr8 | 2705214 | 1.86% | 2861 |
| chr9 | 2517825 | 1.82% | 2898 |
| chr10 | 2678672 | 2.00% | 3057 |
| chr11 | 2987357 | 2.21% | 3383 |
| chr12 | 2549263 | 1.91% | 2636 |
| chr13 | 1455239 | 1.27% | 1400 |
| chr14 | 1852303 | 1.73% | 1961 |
| chr15 | 1861419 | 1.83% | 2083 |
| chr16 | 1787560 | 1.98% | 1943 |
| chr17 | 2908819 | 3.49% | 3150 |
| chr18 | 1151648 | 1.43% | 1283 |
| chr19 | 2402135 | 4.10% | 2547 |
| chr20 | 1882217 | 2.92% | 2333 |
| chr21 | 409384 | 0.88% | 457 |
| chr22 | 1065320 | 2.10% | 1189 |
| chrX | 978634 | 0.63% | 1084 |
| chrY | 18720 | 0.03% | 20 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 59012 | 170 | 45928 | 933.34 | 479 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF576FJP.bed.gz | 1.19 MB | 3164b9aac8ed30fe4c16d132b61d241a |
| ENCFF576FJP.tabix.bed.gz | 591.92 KB | 32711bfcbb263650ead00f5140fd8c9d |
| ENCFF576FJP.tabix.bed.gz.tbi | 148.68 KB | 223a61ffcc13cb352c7855120c8aa889 |
| genomic_resource.yaml | 2.22 KB | 2f1d84dfae8bcce503b806979dd85a5d |
| statistics/ |