Histone_ChIP-seq_ENCSR080JPX
Histone_ChIP-seq ENCSR080JPX [biosample_summary="Homo sapiens spleen tissue male adult (54 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR080JPX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR080JPX [biosamplesummary="Homo sapiens spleen tissue male adult (54 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (54 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN775WFD|/analyses/ENCAN775WFD/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF670VZJ|/files/ENCFF670VZJ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 42403232 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF261YAA|/files/ENCFF261YAA/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF261YAA|/files/ENCFF261YAA/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR080JPX | float |
Histone_ChIP-seq_ENCSR080JPX |
Histone_ChIP-seq ENCSR080JPX [biosample_summary="Homo sapiens spleen tissue male adult (54 years)" and target="H3K27me3"]
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[1.12, 21.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF141VUN.bed.gz | 1.92 MB | b1c0001d7004a1978a105e2404b46071 |
| ENCFF141VUN.bed.gz.dvc | 101.0 B | 2cc9e2f885978b8baaa9850958fbd2b5 |
| ENCFF141VUN.tabix.bed.gz | 940.76 KB | c9c01ef7a2cfda52cfc225a0a61bff2e |
| ENCFF141VUN.tabix.bed.gz.dvc | 106.0 B | 9e2dc1d77765ed7724640d0406edaa1a |
| ENCFF141VUN.tabix.bed.gz.tbi | 207.15 KB | 72c5457e4f07cf0f7b9d2b124ca83d05 |
| ENCFF141VUN.tabix.bed.gz.tbi.dvc | 110.0 B | fbed936a538b70a587861bf77d437e7b |
| genomic_resource.yaml | 3.21 KB | eec10d99038a274178358fad9db1bead |
| genomic_resource_original.yaml | 3.08 KB | 7d55c04274d8fc274b444ebd79b02e4c |
| statistics/ |