Histone_ChIP-seq_ENCSR077HGR
Histone_ChIP-seq ENCSR077HGR [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR077HGR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR077HGR [biosamplesummary="Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN555GFY|/analyses/ENCAN555GFY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF301TQX|/files/ENCFF301TQX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR077HGR | float |
Histone_ChIP-seq_ENCSR077HGR |
Histone_ChIP-seq ENCSR077HGR [biosample_summary="Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)" and target="H3K4me3"]
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[1.38, 76.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF129HDT.bed.gz | 849.32 KB | 2dd176c4909a94e746709ed345205fae |
| ENCFF129HDT.bed.gz.dvc | 100.0 B | df0ed651a06202e17561b31f38b29e09 |
| ENCFF129HDT.tabix.bed.gz | 356.92 KB | 448ffc7ad099b4df06b9c8f0b33c657c |
| ENCFF129HDT.tabix.bed.gz.dvc | 106.0 B | 67efc9a3654ff1acf0151bec631cc01d |
| ENCFF129HDT.tabix.bed.gz.tbi | 186.6 KB | 5f96e593096f19000635b145b0aebd2c |
| ENCFF129HDT.tabix.bed.gz.tbi.dvc | 110.0 B | 31edc3ae552d64ae39f449180ad97b7a |
| genomic_resource.yaml | 2.19 KB | d47f78b8d4bbc219e39c4be2150bf5ba |
| genomic_resource_original.yaml | 2.04 KB | ffc673f59ba4789029b12210050aab29 |
| statistics/ |