Histone_ChIP-seq_ENCSR077FZT
Histone_ChIP-seq ENCSR077FZT [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell" and target="H3K4me3"]
×
| Id: | Histone_ChIP-seq/ENCSR077FZT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR077FZT [biosamplesummary="Homo sapiens CD4-positive, alpha-beta memory T cell" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN576JOG|/analyses/ENCAN576JOG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF466SWT|/files/ENCFF466SWT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF466SWT|/files/ENCFF466SWT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.61. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR077FZT | float |
Histone_ChIP-seq_ENCSR077FZT |
Histone_ChIP-seq ENCSR077FZT [biosample_summary="Homo sapiens CD4-positive, alpha-beta memory T cell" and target="H3K4me3"]
|
|
[1.61, 21] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF925RBM.bed.gz | 532.02 KB | 08aade3ffca60020739e48f7bdbd1c7b |
| ENCFF925RBM.bed.gz.dvc | 100.0 B | 1de0ef5c185bf5020e8f64f28088e102 |
| ENCFF925RBM.tabix.bed.gz | 248.45 KB | 2616705ed9baa49638e53cc4a59b43cb |
| ENCFF925RBM.tabix.bed.gz.dvc | 106.0 B | 752521a08550a182d6915721802a6e8a |
| ENCFF925RBM.tabix.bed.gz.tbi | 122.91 KB | 1a685b15275716efc07a3b97e72836fe |
| ENCFF925RBM.tabix.bed.gz.tbi.dvc | 110.0 B | 14c9761bf79e5d673a3fc9e854a72153 |
| genomic_resource.yaml | 2.78 KB | a3a01bd894119d14db0ef6b00460fd8a |
| genomic_resource_original.yaml | 2.65 KB | 85205b814019c93aa1ae7cd1bffc60dd |
| statistics/ |