Histone_ChIP-seq_ENCSR076JBA
Histone_ChIP-seq ENCSR076JBA [biosample_summary="Homo sapiens OCI-LY1" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR076JBA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR076JBA [biosamplesummary="Homo sapiens OCI-LY1" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN100UKM|/analyses/ENCAN100UKM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN100UKM|/analyses/ENCAN100UKM/} has in progress subobject document {291c18e7-3ca0-480e-bc0c-2fdc35367e19|/documents/291c18e7-3ca0-480e-bc0c-2fdc35367e19/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF092UPO|/files/ENCFF092UPO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF092UPO|/files/ENCFF092UPO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.63. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF914MHF|/files/ENCFF914MHF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF914MHF|/files/ENCFF914MHF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR076JBA | float |
Histone_ChIP-seq_ENCSR076JBA |
Histone_ChIP-seq ENCSR076JBA [biosample_summary="Homo sapiens OCI-LY1" and target="H3K9ac"]
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[1.48, 42] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF233RHV.bed.gz | 1.07 MB | a5478d5b743cb64f40d0c0f889480f76 |
| ENCFF233RHV.bed.gz.dvc | 101.0 B | 90204d795cb4f45901add3ca29a1c86a |
| ENCFF233RHV.tabix.bed.gz | 455.57 KB | 9c5bd7fcac520bb5c03520e9487b615c |
| ENCFF233RHV.tabix.bed.gz.dvc | 106.0 B | b5453d537a86762dd349bf5038ff0edb |
| ENCFF233RHV.tabix.bed.gz.tbi | 147.35 KB | 0ced91e2ef7934080e443e098fdd31e5 |
| ENCFF233RHV.tabix.bed.gz.tbi.dvc | 110.0 B | e6b94e1eb9f3ba7531c6305cd001463c |
| genomic_resource.yaml | 4.22 KB | 4f7c8abe95c94c5ed3c838d0d662526d |
| genomic_resource_original.yaml | 4.11 KB | b0041cfb9335fd8ba0d345862373767e |
| statistics/ |