Histone_ChIP-seq_ENCSR075PTL
Histone_ChIP-seq ENCSR075PTL [biosample_summary="Homo sapiens muscle layer of duodenum tissue male adult (73 years)" and target="H3K4me3"]
×
| Id: | Histone_ChIP-seq/ENCSR075PTL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR075PTL [biosamplesummary="Homo sapiens muscle layer of duodenum tissue male adult (73 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN021QLF|/analyses/ENCAN021QLF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF801YRO|/files/ENCFF801YRO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16419881 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF801YRO|/files/ENCFF801YRO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF801YRO|/files/ENCFF801YRO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.73. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR075PTL | float |
Histone_ChIP-seq_ENCSR075PTL |
Histone_ChIP-seq ENCSR075PTL [biosample_summary="Homo sapiens muscle layer of duodenum tissue male adult (73 years)" and target="H3K4me3"]
|
|
[1.49, 86.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF088VQH.bed.gz | 1.04 MB | 4d13a90bd62dd93e3e64a513e04bafd2 |
| ENCFF088VQH.bed.gz.dvc | 101.0 B | 1c1df03a04cfdae814a1b382f673185f |
| ENCFF088VQH.tabix.bed.gz | 476.29 KB | ad65817a1408da451501bf9668dd7433 |
| ENCFF088VQH.tabix.bed.gz.dvc | 106.0 B | d207874b47d2f151830008b9d0138b42 |
| ENCFF088VQH.tabix.bed.gz.tbi | 214.47 KB | af77354316d655f5b7c2c59aa6e10507 |
| ENCFF088VQH.tabix.bed.gz.tbi.dvc | 110.0 B | 9d9beb3d4cd59ed775b5498ee02101a7 |
| genomic_resource.yaml | 3.29 KB | eb0ec636c497bda9f64455a05545e2a9 |
| genomic_resource_original.yaml | 3.14 KB | d41779bc570d5c0b4a61578c5ffaeb3c |
| statistics/ |