Histone_ChIP-seq_ENCSR074TRC
Histone_ChIP-seq ENCSR074TRC [biosample_summary="Homo sapiens SK-N-SH" and target="H3K79me2"]
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| Id: | Histone_ChIP-seq/ENCSR074TRC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR074TRC [biosamplesummary="Homo sapiens SK-N-SH" and target="H3K79me2"] |
| Description: |
status: archived biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN155KKA|/analyses/ENCAN155KKA/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF921IYR|/files/ENCFF921IYR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9276879 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF388DSF|/files/ENCFF388DSF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 29211034 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF921IYR|/files/ENCFF921IYR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF921IYR|/files/ENCFF921IYR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.99. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR074TRC | float |
Histone_ChIP-seq_ENCSR074TRC |
Histone_ChIP-seq ENCSR074TRC [biosample_summary="Homo sapiens SK-N-SH" and target="H3K79me2"]
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[1.65, 25.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF703MCA.bed.gz | 2.43 MB | 8ef2f161c7473e7e79c61de624357f73 |
| ENCFF703MCA.bed.gz.dvc | 101.0 B | 9d53d78c24b7654908b59d10fac07c9e |
| ENCFF703MCA.tabix.bed.gz | 1.06 MB | 3528f0499286eee6ceadfa540b9143cb |
| ENCFF703MCA.tabix.bed.gz.dvc | 107.0 B | 00431b6b379d4f78f52a844d1cc7201e |
| ENCFF703MCA.tabix.bed.gz.tbi | 138.13 KB | 08afe696ecacfe69ceb8bcdeb6079a47 |
| ENCFF703MCA.tabix.bed.gz.tbi.dvc | 110.0 B | dc259e65b282f7e6a4968b7ffb1fd4ce |
| genomic_resource.yaml | 3.68 KB | eaabf83a8f44a9b4747fe89532928ab9 |
| genomic_resource_original.yaml | 3.57 KB | a0c7d525fe7d97f5bbf0eb8156003fc3 |
| statistics/ |