Resource

Id Histone_ChIP-seq/ENCSR074FPHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR074FPH [biosample_summary="Homo sapiens placenta tissue male embryo (16 weeks)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR074FPH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue male embryo (16 weeks)
  • date_created: 2017-03-22T16:16:57.729732+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR074FPH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR074FPH float

Histone_ChIP-seq_ENCSR074FPH
Histone_ChIP-seq ENCSR074FPH [biosample_summary="Homo sapiens placenta tissue male embryo (16 weeks)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR074FPH [1.81, 54.6]
n
28,465,226
mean
20
sd
10.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 284652260.88% 22974
chr1 2831698 1.14% 2323
chr2 1920205 0.79% 1556
chr3 1563258 0.79% 1210
chr4 1096640 0.58% 847
chr5 1340698 0.74% 1034
chr6 1677350 0.98% 1307
chr7 1422286 0.89% 1203
chr8 1011049 0.70% 816
chr9 1156254 0.84% 958
chr10 1182772 0.88% 909
chr11 1593458 1.18% 1238
chr12 1467016 1.10% 1154
chr13 553769 0.48% 451
chr14 921216 0.86% 709
chr15 932285 0.91% 763
chr16 1177651 1.30% 966
chr17 1723369 2.07% 1362
chr18 430639 0.54% 365
chr19 2007361 3.42% 1685
chr20 720112 1.12% 587
chr21 271014 0.58% 224
chr22 660986 1.30% 556
chrX 783318 0.50% 729
chrY 20822 0.04% 22
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 22974 185 9335 1239.02 1084
global segment-length histogram

Files

Filename Size md5
ENCFF364CUW.bed.gz 588.25 KB 868909b0537b1dbbadf9ae2230fce690
ENCFF364CUW.tabix.bed.gz 260.22 KB 5b6c0f3cd655fe9218450f7cd4da7db1
ENCFF364CUW.tabix.bed.gz.tbi 141.86 KB e7794be808fa28b1622d8bff987158b2
genomic_resource.yaml 1.99 KB 14e987cdf0c63325932825307c5b6261
statistics/