Resource
| Id | Histone_ChIP-seq/ENCSR074BEW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR074BEW [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (67 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (67 years) with basal cell carcinoma output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN813JIB|/analyses/ENCAN813JIB/} has in progress subobject document {87bc59a1-57e4-46c9-b70b-455be97570a8|/documents/87bc59a1-57e4-46c9-b70b-455be97570a8/} audit_internal_action: Released analysis {ENCAN813JIB|/analyses/ENCAN813JIB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF585STH|/files/ENCFF585STH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF585STH|/files/ENCFF585STH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.84. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR074BEW | float |
Histone_ChIP-seq_ENCSR074BEW |
Histone_ChIP-seq ENCSR074BEW [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (67 years)" and target="H3K4me3"]
|
 |
[1.91, 86.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 43550767 | 1.35% | 23423 |
| chr1 | 4452432 | 1.79% | 2408 |
| chr2 | 2993734 | 1.24% | 1584 |
| chr3 | 2394664 | 1.21% | 1303 |
| chr4 | 1594815 | 0.84% | 835 |
| chr5 | 2060376 | 1.13% | 1063 |
| chr6 | 2528271 | 1.48% | 1329 |
| chr7 | 2094090 | 1.31% | 1164 |
| chr8 | 1565901 | 1.08% | 845 |
| chr9 | 1760005 | 1.27% | 960 |
| chr10 | 1821444 | 1.36% | 975 |
| chr11 | 2372531 | 1.76% | 1215 |
| chr12 | 2314873 | 1.74% | 1201 |
| chr13 | 870200 | 0.76% | 483 |
| chr14 | 1428712 | 1.33% | 745 |
| chr15 | 1394415 | 1.37% | 757 |
| chr16 | 1750735 | 1.94% | 948 |
| chr17 | 2638203 | 3.17% | 1377 |
| chr18 | 726507 | 0.90% | 413 |
| chr19 | 2845734 | 4.85% | 1627 |
| chr20 | 1150732 | 1.79% | 625 |
| chr21 | 450688 | 0.96% | 255 |
| chr22 | 1015190 | 2.00% | 555 |
| chrX | 1278704 | 0.82% | 728 |
| chrY | 47811 | 0.08% | 28 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 23423 | 245 | 15082 | 1859.32 | 1674 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF843LCY.bed.gz | 642.05 KB | 479c9f36233e5e91fa189d895ec1645f |
| ENCFF843LCY.tabix.bed.gz | 276.14 KB | 76f6c74567dfec295a76aebd2dc009d9 |
| ENCFF843LCY.tabix.bed.gz.tbi | 155.06 KB | 34047f8abad885f80abfd810eb7f52e4 |
| genomic_resource.yaml | 3.12 KB | 0b0564347694e2b5ca0b4c2345614373 |
| statistics/ |