| Id: | Histone_ChIP-seq/ENCSR074BEW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR074BEW [biosamplesummary="Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (67 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (67 years) with basal cell carcinoma output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN813JIB|/analyses/ENCAN813JIB/} has in progress subobject document {87bc59a1-57e4-46c9-b70b-455be97570a8|/documents/87bc59a1-57e4-46c9-b70b-455be97570a8/} audit_internal_action: Released analysis {ENCAN813JIB|/analyses/ENCAN813JIB/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF585STH|/files/ENCFF585STH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF585STH|/files/ENCFF585STH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.84. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR074BEW | float |
Histone_ChIP-seq_ENCSR074BEW |
Histone_ChIP-seq ENCSR074BEW [biosample_summary="Homo sapiens with basal cell carcinoma; skin epidermis tissue male adult (67 years)" and target="H3K4me3"]
|
 |
[1.91, 86.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF843LCY.bed.gz | 642.05 KB | 479c9f36233e5e91fa189d895ec1645f |
| ENCFF843LCY.bed.gz.dvc | 100.0 B | bfd4f26cff45e08b77f42adc701ecb9f |
| ENCFF843LCY.tabix.bed.gz | 276.14 KB | 76f6c74567dfec295a76aebd2dc009d9 |
| ENCFF843LCY.tabix.bed.gz.dvc | 106.0 B | 9de4b0cb2b0ac1c359830b6dbdba7654 |
| ENCFF843LCY.tabix.bed.gz.tbi | 155.06 KB | 34047f8abad885f80abfd810eb7f52e4 |
| ENCFF843LCY.tabix.bed.gz.tbi.dvc | 110.0 B | 1f75edb3dea2a4085f6ff14cc4b8678e |
| genomic_resource.yaml | 3.12 KB | 0b0564347694e2b5ca0b4c2345614373 |
| genomic_resource_original.yaml | 2.96 KB | 3f89ac047981d27e542d9f05bc76e67b |
| statistics/ |