Histone_ChIP-seq_ENCSR069UMW
Histone_ChIP-seq ENCSR069UMW [biosample_summary="Homo sapiens ascending aorta tissue female adult (53 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR069UMW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR069UMW [biosamplesummary="Homo sapiens ascending aorta tissue female adult (53 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN828CED|/analyses/ENCAN828CED/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN828CED|/analyses/ENCAN828CED/} has in progress subobject document {e4886021-878b-41a7-9235-e119bac033e9|/documents/e4886021-878b-41a7-9235-e119bac033e9/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF343UYV|/files/ENCFF343UYV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF343UYV|/files/ENCFF343UYV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR069UMW | float |
Histone_ChIP-seq_ENCSR069UMW |
Histone_ChIP-seq ENCSR069UMW [biosample_summary="Homo sapiens ascending aorta tissue female adult (53 years)" and target="H3K27ac"]
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[1.85, 75.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF033TXD.bed.gz | 1.7 MB | ae91facc36c45c6fecbd35319eaf01df |
| ENCFF033TXD.bed.gz.dvc | 101.0 B | 31ce8793db9dae4966f960cef61a62d4 |
| ENCFF033TXD.tabix.bed.gz | 768.73 KB | 49b592033c9d96cb522c3830a1cd5de7 |
| ENCFF033TXD.tabix.bed.gz.dvc | 106.0 B | a79581302320a97fbb57a7f950770130 |
| ENCFF033TXD.tabix.bed.gz.tbi | 220.35 KB | 70647b331b6b709da5b09ea9bbfe4dd6 |
| ENCFF033TXD.tabix.bed.gz.tbi.dvc | 110.0 B | 031cd8b5e56a23c6572660d07fac0c9f |
| genomic_resource.yaml | 3.0 KB | d354ba783b6737437b72e010c0746574 |
| genomic_resource_original.yaml | 2.86 KB | ef04b9d2892bbc7da0e116b730841bd2 |
| statistics/ |