Resource
| Id | Histone_ChIP-seq/ENCSR069UMW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR069UMW [biosample_summary="Homo sapiens ascending aorta tissue female adult (53 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN828CED|/analyses/ENCAN828CED/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN828CED|/analyses/ENCAN828CED/} has in progress subobject document {e4886021-878b-41a7-9235-e119bac033e9|/documents/e4886021-878b-41a7-9235-e119bac033e9/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF343UYV|/files/ENCFF343UYV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF343UYV|/files/ENCFF343UYV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.72. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR069UMW | float |
Histone_ChIP-seq_ENCSR069UMW |
Histone_ChIP-seq ENCSR069UMW [biosample_summary="Homo sapiens ascending aorta tissue female adult (53 years)" and target="H3K27ac"]
|
 |
[1.85, 75.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 115935411 | 3.60% | 69826 |
| chr1 | 11667518 | 4.69% | 6639 |
| chr2 | 9185536 | 3.79% | 5677 |
| chr3 | 8739654 | 4.41% | 5197 |
| chr4 | 5086826 | 2.67% | 3320 |
| chr5 | 6033590 | 3.32% | 3619 |
| chr6 | 6277303 | 3.68% | 3963 |
| chr7 | 4952033 | 3.11% | 3103 |
| chr8 | 4563999 | 3.14% | 2958 |
| chr9 | 5221909 | 3.77% | 3026 |
| chr10 | 6951901 | 5.20% | 4116 |
| chr11 | 6296230 | 4.66% | 3511 |
| chr12 | 6276858 | 4.71% | 3780 |
| chr13 | 2444404 | 2.14% | 1543 |
| chr14 | 3580265 | 3.34% | 2093 |
| chr15 | 4405906 | 4.32% | 2576 |
| chr16 | 3758277 | 4.16% | 2316 |
| chr17 | 5311142 | 6.38% | 3135 |
| chr18 | 2067931 | 2.57% | 1321 |
| chr19 | 3884438 | 6.63% | 2221 |
| chr20 | 3107163 | 4.82% | 1802 |
| chr21 | 1447460 | 3.10% | 884 |
| chr22 | 2398858 | 4.72% | 1338 |
| chrX | 2276210 | 1.46% | 1688 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 69826 | 225 | 60159 | 1660.35 | 1061.5 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF033TXD.bed.gz | 1.7 MB | ae91facc36c45c6fecbd35319eaf01df |
| ENCFF033TXD.tabix.bed.gz | 768.73 KB | 49b592033c9d96cb522c3830a1cd5de7 |
| ENCFF033TXD.tabix.bed.gz.tbi | 220.35 KB | 70647b331b6b709da5b09ea9bbfe4dd6 |
| genomic_resource.yaml | 3.0 KB | d354ba783b6737437b72e010c0746574 |
| statistics/ |