Histone_ChIP-seq_ENCSR067VEM
Histone_ChIP-seq ENCSR067VEM [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR067VEM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR067VEM [biosamplesummary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN296UMS|/analyses/ENCAN296UMS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF541BDH|/files/ENCFF541BDH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF541BDH|/files/ENCFF541BDH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR067VEM | float |
Histone_ChIP-seq_ENCSR067VEM |
Histone_ChIP-seq ENCSR067VEM [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="H3K9me3"]
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[1.56, 18.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF153MLO.bed.gz | 2.02 MB | 15949c4dd8e7ea34bd6bccf7f1acfec7 |
| ENCFF153MLO.bed.gz.dvc | 101.0 B | 35d48451fddb14550df614b6bbddc236 |
| ENCFF153MLO.tabix.bed.gz | 1.02 MB | dc9b281b1dc2f7d104b5b70055e9ca99 |
| ENCFF153MLO.tabix.bed.gz.dvc | 107.0 B | 039bc99846679c8154b1443abdc9d7e3 |
| ENCFF153MLO.tabix.bed.gz.tbi | 230.31 KB | b64bfa85925891a97a54263add06fffa |
| ENCFF153MLO.tabix.bed.gz.tbi.dvc | 110.0 B | 752906741c46c7f7d12666cae238d390 |
| genomic_resource.yaml | 2.82 KB | b6bcc012f908b2eb9627f15c6ca95c05 |
| genomic_resource_original.yaml | 2.66 KB | d9c120ba7ebf743f7146c0e26ea2362a |
| statistics/ |